PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000317209

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB

Protein Properties

Length: 255aa MW: 28875.3 Da PI: 8.001

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000317209	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.8	9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W +eEde l +vk +G g+W+ +a++ g++R++k+c++rw++yl MDP0000317209 14 RGAWCAEEDEVLTXYVKTHGEGQWRHVAKKAGLNRSGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	50	6.7e-16	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+ ++eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+ MDP0000317209 67 RGNISPEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNFWN 109 7899****************.*****.*********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.661	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.17E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-15	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.0E-23	15	68	IPR009057	Homeodomain-like
CDD	cd00167	4.02E-10	16	61	No hit	No description
PROSITE profile	PS51294	23.977	62	116	IPR017930	Myb domain
SMART	SM00717	7.6E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-14	67	109	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-23	69	116	IPR009057	Homeodomain-like
CDD	cd00167	4.56E-11	71	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MGRKPSGDTD GLKRGAWCAE EDEVLTXYVK THGEGQWRHV AKKAGLNRSG KSCRLRWLNY 60 LKPGVKRGNI SPEEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNFWNI SLSKRIQEER 120 PQRIINNKQA PNAGDSHHQR GNYCSNPSKD EDGQSNPVKS NPVALSDISD DRDQNSSLSF 180 LRDFDSYIHG LSHEAEINGF XNYVVDDSNF VGHGNGTKCE DLVLREDAEA AKWKXEERFY 240 NVSGTRDGTP YVIIK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-25	12	116	5	108	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028944735.1	1e-171	transcription factor WER-like
TrEMBL	A0A498KFH0	1e-165	A0A498KFH0_MALDO; Uncharacterized protein
STRING	XP_009361730.1	1e-164	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17855	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14750.1	1e-53	myb domain protein 66

Link Out ? help Back to Top
Phytozome	MDP0000317209