PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000314518
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 414aa    MW: 45799.6 Da    PI: 8.9037
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000314518genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.82.6e-1369125155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  MDP0000314518  69 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 125
                    57*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-969125IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1569134IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.8E-1270134IPR001471AP2/ERF domain
SMARTSM003805.3E-1970139IPR001471AP2/ERF domain
PROSITE profilePS5103218.51870133IPR001471AP2/ERF domain
PRINTSPR003674.0E-57182IPR001471AP2/ERF domain
PRINTSPR003674.0E-5115135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MASSSSDPGP KTESGGGSGG GGAEPSEAVM ASDQLMVYRG VKKSKKERGC TAKERISKMP  60
PCAAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK GKQGAYDDEE AAARAYDLAA  120
LKYWGPGTLI NFPVTDYTRD LEEMQNLSRE EYLASLRRKS SGFSRGLSKY RGLSRYALPL  180
TVACRQFVGS RHWVVWVDLS TSIAYIMCHS CLIRPEGTGV DPATESELLG AFCIERKIDL  240
TSYIKWWGPN RSRQAETSMK SSEETKHGCV GDIGAELKTL EWEIQPTEPY QMPRLGISHV  300
SKKHKGTRVS AMSILSRSAA YKNLQEKASQ KEEKDADNDE NENKNTIHKM DYGKAVEKST  360
SHDEGLSSAL GMSGGPSHQR DVFPLAPFLS APLLTSYSAI DPLVDPILWT SLAP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.251740.0fruit| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028946372.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-137AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A498IGH10.0A0A498IGH1_MALDO; Uncharacterized protein
STRINGXP_008387305.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-122AP2 family protein