PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000313040
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Dof
Protein Properties Length: 387aa    MW: 40908.2 Da    PI: 8.2281
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000313040genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.51.7e-3942102262
         zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                    +e+alkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk+kk +
  MDP0000313040  42 PEQALKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKKXR 102
                    6899*****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-254395IPR003851Zinc finger, Dof-type
PfamPF027014.6E-3344100IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.34846100IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104884IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MMSSDAAPPA KLKDDENPTG GSGSSRPKTT SSSSSGPKLP PPEQALKCPR CDSPNTKFCY  60
YNNYSLTQPR HFCKTCRRYW TKGGALRNVP IGGGCRKSKK XRSSSSSNSR LSCSFDSSKD  120
SAGSSSSENM MLGGLKFFHG ISPAMDFQLG XISRLHNNNQ FSSNPAAGIN FNNPFSAFGD  180
VSGISGLNIS TLEPSAGGGT NACNNSFMGF NYPLTLGGGG GGASGSGGLI STQNMMSAMN  240
VHSSLASSIE SLSSINQDLH WKMQQQRLAM LFGTEEHDQS THSTQSQLEN QQXTQQMITP  300
ISLFQNLEVS SSSKPDHHQG VSHGRKEGGD TATEWFFGNS YAPPVTPTPT NSGGGGGGAG  360
GNENASNWPH GIPAWSSHDL QQYNALP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364234.10.0PREDICTED: dof zinc finger protein DOF5.7-like
TrEMBLA0A498KI060.0A0A498KI06_MALDO; Uncharacterized protein
STRINGXP_008392766.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38543460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.14e-41Dof family protein