PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000312274 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 356aa MW: 39542.2 Da PI: 4.6138 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.6 | 7.9e-12 | 189 | 232 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L MDP0000312274 189 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 232 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.491 | 183 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-15 | 186 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-9 | 189 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-12 | 189 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-15 | 190 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.89E-5 | 190 | 236 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MELSEHGFLE ELLLAPRRDG WSSLNSGLNE LFPINGWSLD SFEENPVLVS SLNPQFVGFS 60 TQSSFEECPF TTTTTASSSS YPFVVDGLCA VPEINGTTTP PPFPPQDHXD YPPMVEDEEF 120 GNFLGSENHS SCLELEESKN KDNLGTCKVE MDQQAADHHI IPSAFSMGLC GEKRSSKSKK 180 LEGQPSKNLM AERRRRKRLN DRLSMLRSIV PKISKMDRTS ILGDTIDYMK ELLERINKLQ 240 EEGTEEGTNQ INLMGTSKDL SSSEVLVRNS PKFDVERRDG DTRIDICCAA KPGLLLSTVN 300 TIEALGLEIK QCVISCFNDF SMQASCSEGA EQRNLLSPQD IKQALFRNAG YGGRCL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 191 | 198 | ERRRRKRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.1123 | 0.0 | fruit| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP689416 | 0.0 | KP689416.1 Prunus pseudocerasus isolate Unigene13488 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008385974.2 | 0.0 | transcription factor bHLH93 | ||||
Swissprot | Q9LSL1 | 1e-93 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A498KJP9 | 0.0 | A0A498KJP9_MALDO; Uncharacterized protein | ||||
STRING | XP_008385974.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1186 | 34 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 1e-95 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000312274 |
Publications ? help Back to Top | |||
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