PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000309946
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 399aa    MW: 43270.4 Da    PI: 9.2208
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000309946genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.2e-114773127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                   ++ ++C +++rtG+C yG+rC+++H++
  MDP0000309946 47 PGVPNCVYYMRTGFCGYGGRCRYNHPR 73
                   5789*********************96 PP
2zf-CCCH29.71.1e-09100124327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    + +C ++++tG+Ck+G +CkF+H++
  MDP0000309946 100 ENECFYYLKTGQCKFGITCKFHHPQ 124
                    66899******************97 PP
3zf-CCCH35.61.6e-11258281427
                    ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     +C+++++tG CkyG++C+++H++
  MDP0000309946 258 LECQYYLKTGDCKYGPSCRYHHPR 281
                    58********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.5354674IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-64673IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-84873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-65075IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-45273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.41398125IPR000571Zinc finger, CCCH-type
SMARTSM003560.001899124IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-799124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5101125IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-5254281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605254282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6258283IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-9258281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5260282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MRYNLSASSP VDMPVVQYPV GSLLATLAPS SSSSDLRPPS ESYPERPGVP NCVYYMRTGF  60
CGYGGRCRYN HPRDRAAVVA AIRATGDYPE RVGKPVCQGE NECFYYLKTG QCKFGITCKF  120
HHPQPAGTTI PASVPQFYPL VQSPVPLAEQ YGGASTSLRV ARPPLLTGSY VQGTYCPVLI  180
PPPGVVPIQG WSPYSAPLSA VPSPGAQPTV GATSLYGVTQ LSSPTHGLAS PYTSIPSSVG  240
PSSSNPSEQV FPERPGELEC QYYLKTGDCK YGPSCRYHHP RDRTVPRITC LLSPMGLPLR  300
PLAKKRLPYY VYMLSKHVLL SDVQLSSQTS SPLSNSRSTR PGGAFRRSIE SNTQSRTFII  360
SSSAVYIDVD SKCVTGQLCK GRHISVYGLV YQPNLFIPQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.122111e-166fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017183274.11e-179zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W911e-114C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A498ISN91e-150A0A498ISN9_MALDO; Uncharacterized protein
STRINGXP_008355482.11e-173(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.36e-94C3H family protein