PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000304202
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ARR-B
Protein Properties Length: 777aa    MW: 88421.1 Da    PI: 5.6281
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000304202genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.21.8e-23463516155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    kp+++Wt+eLH++Fv+av+ L G + A Pk+il++m+v+gL  e+  SHLQkYRl
  MDP0000304202 463 KPKMVWTNELHKKFVQAVTLL-GVDSAHPKKILQHMNVPGLWKENXSSHLQKYRL 516
                    79*******************.********************************8 PP
2Response_reg52.52.7e-182683751108
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    vl vd + + + ll ++l k gy +v +a+ + +al ++++k+   +l+l+ + +p+md +ell+++r+ + klp++++++ ++e+ +l  l  Ga
  MDP0000304202 268 VLAVDGDSACLTLLSRMLCKLGY-KVLTAKRACDALSIAQKKEseLHLVLTEVHLPDMDKYELLERMRAVS-KLPVVIMSDDDDENAMLGGLFKGA 361
                    7899*******************.***************998888************************99.************************ PP

                    SEEEESS--HHHHH CS
   Response_reg  95 kdflsKpfdpeelv 108
                      +++Kp  ++ l 
  MDP0000304202 362 VYYIVKPLTMDSLK 375
                    *******9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.4E-25261379No hitNo description
SuperFamilySSF521724.41E-25266381IPR011006CheY-like superfamily
SMARTSM004481.0E-17266378IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011030.602267382IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.9E-14268376IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.03E-18269382No hitNo description
SuperFamilySSF466896.45E-16460520IPR009057Homeodomain-like
PROSITE profilePS512949.125460519IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.8E-25461520IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-19463516IPR006447Myb domain, plants
PfamPF002492.1E-5465514IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
MYLRNNHGYF NENDGPRVSW ESPKTEMLVQ FLTYHQRWEP SYIRQRMLPM LSTIFREMAK  60
NPVKSLLYGQ YEFNSIDRLK IRYGHQFYLV NYLIPPEDSD KQQDDVMEVD ESLSPLDESD  120
VPTREISGXC CFLLTDENMD LVHAAFPVEV DRFLQEKELK QLKRRKTTGG KPETPGSEVW  180
SHTAPYRSDR IEHENKTTRT XFXDANVDPE NIVKEVFAST NAVVSVDNHM RLLXHTESKQ  240
SCEAMNDEKA VPVESMKNCS PVPEAVTVLA VDGDSACLTL LSRMLCKLGY KVLTAKRACD  300
ALSIAQKKES ELHLVLTEVH LPDMDKYELL ERMRAVSKLP VVIMSDDDDE NAMLGGLFKG  360
AVYYIVKPLT MDSLKNLWQF AFISNRDAVT TXNNRDXVID LTADDSSGEF QQEYTSNEGL  420
EIESIXKKEK QISXRKSLKR KNPEGMNKDK GGDNSDSTCT QKKPKMVWTN ELHKKFVQAV  480
TLLGVDSAHP KKILQHMNVP GLWKENXSSH LQKYRLSLKQ EQEEIMMXKA RETTESSFPT  540
SPLNFPGGSS NQFPKXSPFT STAYQPXIRS HCRNPSSNMT RPSPGSTFVC LPSTQSSNES  600
TFASNHFSSN YKNGQPTLSN HFGKVASYMN FDFPILLHNY IQQEEHQQQL IQPRLLFSPP  660
SQMPSPLPPP EEQQGNNIFG SENQLQPQVL LAPPSLPPPA QEQGNHDDIF GLGKQFQTND  720
VXLSPQRKXP SLAPTPATQE QKETDMFGIE RGDMDDLFDI AKGTTQQFHD VNFDDFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-16461520362ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158164LKQLKRR
2159165KQLKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028961680.10.0two-component response regulator ORR26-like
TrEMBLA0A498KJR40.0A0A498KJR4_MALDO; Uncharacterized protein
STRINGEMJ223530.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145541114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-52response regulator 2