PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000301451
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 453aa    MW: 49399.6 Da    PI: 5.0862
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000301451genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.61e-1535126187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    +W+++ + +L++a  ++  +l+rg+l++++W+ev++++     + ++ +r+ +qCk++++ ++k+yk +k + ++ + + +s++p+f++l+a
  MDP0000301451  35 CWSEDATSTLVDAWGRRYIELNRGNLRQKDWQEVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKVEKVRVSSSNGTLTSSWPFFERLDA 126
                    7****************************************99999*********************9999999988888889******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.6E-2633127No hitNo description
Gene3DG3DSA:3.90.70.102.1E-4312374No hitNo description
SuperFamilySSF540014.92E-8314424No hitNo description
Gene3DG3DSA:3.90.70.102.9E-4382425No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MGDLTDLQIT PFNAGTTAST PPSSKPRPMP VREDCWSEDA TSTLVDAWGR RYIELNRGNL  60
RQKDWQEVAD AVNALHGHTK KTHRTDVQCK NRIDTIKKKY KVEKVRVSSS NGTLTSSWPF  120
FERLDALIGS NVKKVSPSSP SPQSPSLPVA VPLPLGYRKT PSSAPVVTAV ALPQKRSAST  180
AALDEGFFRM NYSAVAAAAA AAAGAEDEDD EDEDEDDEDN DEADEEVEMA RESGGEVGGG  240
GGGGEGLKRL ARAIESFGEV YQRVEAEKLR QMVELEKQRI QFANELEVER MRMIMDTQVQ  300
LERIKHGKRS GSNXLTNEEF REHSCITGYK KQSSKAFVSK GAAAGFKHGS VTDVPPSVXW  360
GEEGIVTPIK DQENVVKITW LSPVFVASDA SRSAFHLYSS RVLTGTGTCN LDHFFTAVGY  420
ETSGDGTMDS MAFMPKEGLG GIGVYMFSAI FSN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.217990.0cell culture| fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008383624.20.0trihelix transcription factor ASIL2-like
TrEMBLA0A498IVY40.0A0A498IVY4_MALDO; Uncharacterized protein
STRINGXP_008383624.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-41sequence-specific DNA binding transcription factors