PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000297196
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 562aa    MW: 62361.3 Da    PI: 5.024
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000297196genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.41.7e-08159209155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+++GV++++ +gr++A I+d +   ++ +   g f+ +e+Aa+a++  ++kl+g
  MDP0000297196 159 SHFRGVSRYP-NGRFEAFIWDST---IQENKKTGGFDREEDAARAHDLLALKLWG 209
                    789*******.8*********43...347888899*****************998 PP
2AP247.73.9e-15252302154
            AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkle 54 
                    s y+GV++++++++W A I      g   k f+lg+f+t+eeAa+a++ a  k +
  MDP0000297196 252 SIYRGVSRNSNSKKWQAKIGK----GaGFKGFYLGTFDTEEEAARAYDVALIKTK 302
                    57****************888....4445********************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.16E-17159217No hitNo description
SuperFamilySSF541713.86E-13159219IPR016177DNA-binding domain
SMARTSM003809.3E-15160223IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-12160218IPR001471AP2/ERF domain
PROSITE profilePS5103214.355160217IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-15252312IPR016177DNA-binding domain
PfamPF008471.4E-10252299IPR001471AP2/ERF domain
CDDcd000189.86E-18252311No hitNo description
SMARTSM003801.4E-18253317IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-15253311IPR001471AP2/ERF domain
PROSITE profilePS5103216.081253311IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MHSSDNFLFP YHFSSHSSSS KLRSSFLHQM QSDGLSLSXQ SHIFANELDE TFTNYENNTS  60
EANQHPLQPN TQISTVGNSF EVPTQNTSLF SNDPSLSSLP VESVKGFVGD NNNIKSCVNV  120
SEEKSLSNQE ENDSLSGKSL XKCKRRRKIS ERKFSERSSH FRGVSRYPNG RFEAFIWDST  180
IQENKKTGGF DREEDAARAH DLLALKLWGK SAGLNFPLEM YTKDLEEMKN MTYDDYLLRL  240
RRGSASFGKG VSIYRGVSRN SNSKKWQAKI GKGAGFKGFY LGTFDTEEEA ARAYDVALIK  300
TKGTKSVTNF DRNQYDVKRI LESPMIPIGK GASKMLRWSS ADDVLESRRN NTEQKXPMVQ  360
PSPSFEPRSY HTISPFANNS NANQYVDPFL HAFXNTDNFP NFSSSYSLQN TQFPIYPQTI  420
NPTFLPGLTN VDPGPSYIGE SSASQVPEVS LDXMLAEISE NHGSQVVSWD LETILAETNE  480
SLGSQVPEVS LDESLGNDII NEMIPVTGNV GNGNSTIIPG XAANGNVFED FGMEDASGGS  540
ESSFSSTLEV FLMNFEGSKC NA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028948028.10.0AP2-like ethylene-responsive transcription factor PLT2
TrEMBLA0A498HYD50.0A0A498HYD5_MALDO; Uncharacterized protein
STRINGXP_008368108.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1650648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-58AP2 family protein