PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000297148
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 381aa    MW: 41995.8 Da    PI: 10.0969
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000297148genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-14100144347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + k+lG+g+W+ Iar + ++Rt+ q+ s+ qky
    MDP0000297148 100 PWTEEEHRVFLAGLKKLGKGDWRGIARNFVTTRTPTQVASHAQKY 144
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565722IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129421.21193149IPR017930Myb domain
SuperFamilySSF466898.61E-1795148IPR009057Homeodomain-like
SMARTSM007171.5E-1197147IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-1297143IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-1797148IPR006447Myb domain, plants
PfamPF002492.6E-11100144IPR001005SANT/Myb domain
CDDcd001677.45E-10100145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MVKEXARKCS HCGHNGHNSR TCNHSHVNKG VCLKLFGVNI LENQEDSMKK SYSMGNLHTD  60
GNGDHNNNAV GADNDAGYLS DGLIHNKRHK AAHERRKGRP WTEEEHRVFL AGLKKLGKGD  120
WRGIARNFVT TRTPTQVASH AQKYFLRQAT NDKRKRRSSL FDMHFKELSV ILSLSHFKQV  180
LYSFRENXHC TDRTXYEFLS XDQGPQDSSI TPTKSAAETS PQASSSXTRQ LKINTGNNSP  240
XPSNVPTQIL DRFPHLCLDS LPAPPLSPIC TLPNYPAMPF MMGIPGNVSY APMMHFYRPN  300
YHHMIKNHGN SPTSAPVISH PSGIPSSPRS LPSSPSMAAG RISSMTSAAE KDALELKIGQ  360
PQPSQGANLS PSSSSGAIRV T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008375712.20.0probable transcription factor At5g61620
TrEMBLA0A498KKE50.0A0A498KKE5_MALDO; Uncharacterized protein
STRINGXP_008375712.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138741921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.16e-59MYB_related family protein