PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000296814

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 385aa MW: 43204.9 Da PI: 8.3702

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000296814	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.6	7.8e-07	64	110	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Er+RR+ + + Lr+llP + ++K s e +Av+YI+++ MDP0000296814 64 RDNERQRRQLMAALNASLRSLLPYeL---IKGKRSITEHMNEAVNYINHM 110 679*******************88...*****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.07E-9	55	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.55E-5	56	115	No hit	No description
PROSITE profile	PS50888	11.179	58	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-4	62	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MMRVQDLMRC HEVFPEGKNP SRNKMMGKGK QQQQQQHRMI LSPNSNNNGA NPSDGKTERK 60 IVRRDNERQR RQLMAALNAS LRSLLPYELI KGKRSITEHM NEAVNYINHM KAKIEELNAK 120 KEKINKKLYE CDSQDFGLRN EGSGHNFLKY SIMVRPTCLG GVEVLVSSSC GEEEGLLLSG 180 VLKVLLAKGL SVVECASTRV NESLFHTIQC ELVVAFYSDR WNAWIDDHSS DVVDRSSAEV 240 VEPVNSRVSS SQSLSPLVQS GDRDVNNLAR NVQESSSNAT ISNTNAPLHV LQLNQLQVVL 300 PSISSSSSSS SERVIPPSGI HTRLRIGTIA RQDYSALSAM SPEVQSLTLD DDDHFQEASL 360 FLQILLMLQS HQLLDKYRKY LNGRW

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MMRVQDLMRC HEVFPEGKNP SRNKMMGKGK QQQQQQHRMI LSPNSNNNGA NPSDGKTERK  60
IVRRDNERQR RQLMAALNAS LRSLLPYELI KGKRSITEHM NEAVNYINHM KAKIEELNAK  120
KEKINKKLYE CDSQDFGLRN EGSGHNFLKY SIMVRPTCLG GVEVLVSSSC GEEEGLLLSG  180
VLKVLLAKGL SVVECASTRV NESLFHTIQC ELVVAFYSDR WNAWIDDHSS DVVDRSSAEV  240
VEPVNSRVSS SQSLSPLVQS GDRDVNNLAR NVQESSSNAT ISNTNAPLHV LQLNQLQVVL  300
PSISSSSSSS SERVIPPSGI HTRLRIGTIA RQDYSALSAM SPEVQSLTLD DDDHFQEASL  360
FLQILLMLQS HQLLDKYRKY LNGRW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008376734.1	1e-155	transcription factor bHLH120-like
TrEMBL	A0A498KS15	1e-152	A0A498KS15_MALDO; Uncharacterized protein
STRING	XP_008376734.1	1e-154	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF792	33	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	8e-18	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000296814