PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000293310
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 435aa    MW: 49086.6 Da    PI: 10.7118
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000293310genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.2e-112492891055
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    ++RRd iN+++  L++l+P+a      K +Ka++L ++++Y+++Lq
  MDP0000293310 249 QKRRDLINQKIKALQRLVPNA-----SKTDKASMLDEVIKYLQQLQ 289
                    79******************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037636.0E-2144131IPR005516Remorin, C-terminal
PROSITE profilePS5088813.3239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10246294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-13249304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-8249289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-9249293No hitNo description
SuperFamilySSF474591.22E-13249312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MKDQRAQESA FPSRYPNRAS SSRPSTPANG XQNQKGSPGR RNAADAKADA WERAQMKKIQ  60
RRYEKVKATI DAWENEKKMK AKAKMERRKX EIEQRRARNM QHYQIKQARI DQIAGGARAQ  120
VEEKRRNEES KDLIGSCPGG FPHWKCSKVK KPRPRHLAYE GRRTTSNYDV TELKLENGQL  180
AMHGLGALLT AQSNPTWSRS RACDTLESIV DQATCHKRDP NIIRHDQTPA NTSSVVASSG  240
ETWTDSSVQK RRDLINQKIK ALQRLVPNAS KTDKASMLDE VIKYLQQLQA QVQMMHNLRN  300
FMANGHMNMN MMVPLEMQQL QLQHLHQMSL LAHMGIGMGS RIHPTPVVAA ALPSFMPPFM  360
MPLLIPPHPP PQAKAEPTST NNGSDPLPDP YCALLAQQSM SMDLFNRMAA LYRQEVTPAT  420
AASSSQPRSN HVRRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017192951.21e-110transcription factor PIF7-like isoform X1
TrEMBLA0A498I2S61e-133A0A498I2S6_MALDO; Uncharacterized protein
STRINGXP_008367556.11e-98(Malus domestica)
STRINGXP_008393195.14e-98(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.17e-18bHLH family protein