PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000293078

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Trihelix

Protein Properties

Length: 519aa MW: 59798.6 Da PI: 6.4089

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000293078	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.9	1.6e-29	63	148	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r+ ++++++++++k+plW+evs+ m +e+gf+r+ k+Ckek+enl k+ykk+keg+ +r ++ +++++f+qlea MDP0000293078 63 RWPRQETLTLLEIRSALDSKFKETNQKGPLWDEVSRIMaEEHGFQRTGKKCKEKFENLYKYYKKTKEGKTGR--QDGKHYRFFRQLEA 148 8***********************************999*************************98..55667*****85 PP
2	trihelix	64.9	1.7e-20	363	449	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rWt+qev Li++++++e+++++++ ++++ Wee++++m g++rs +Ckekwen + +k ++e++k ++++++++ yf+q+ MDP0000293078 363 RWTEQEVTSLIQLKTSLEQTFKESEylKEEGVWEEIAANMGXLGYTRSGGECKEKWENESVCFKMTTESNKMHKQDTKTNNMYFSQI 449 8*******************9977799******************************************99999999999997 PP
3	Myb_DNA-binding	22.2	3.3e-07	363	420	3	46
SS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT...TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...........tWktIartmg...kgRtlkqcksrwqk 46 rWT++E l+++ + l W+ Ia+ mg +R++ +ck++w + MDP0000293078 363 RWTEQEVTSLIQLKTSLEQTfkeseylkeegVWEEIAANMGxlgYTRSGGECKEKWEN 420 9***************99**********************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.783	56	121	IPR017877	Myb-like domain
SMART	SM00717	0.35	60	123	IPR001005	SANT/Myb domain
CDD	cd12203	1.32E-20	62	128	No hit	No description
Pfam	PF13837	1.6E-20	62	149	No hit	No description
SMART	SM00717	0.0069	360	424	IPR001005	SANT/Myb domain
CDD	cd12203	1.75E-16	362	429	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.2E-5	363	420	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.654	363	422	IPR017877	Myb-like domain
Pfam	PF13837	4.5E-13	363	437	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MXSSDVVPAA GLLDNHRYTS MITTTACHPT TSSAASAAAA LYGIEFEHGW NNIDGANTNN 60 NSRWPRQETL TLLEIRSALD SKFKETNQKG PLWDEVSRIM AEEHGFQRTG KKCKEKFENL 120 YKYYKKTKEG KTGRQDGKHY RFFRQLEAIY GNHHQSTNQS SFYSRSNPLL CHTTPSDSIN 180 RDQNQEVVVQ DQKLISYESL SFSNNSTEFD QTSPSKNKDD DDSLSAIDYF PMNQSTGSLK 240 NEKKSYATSV KKKWKAKVVD FMNSQMGKVI KTQEALMEKM VKSIEASADE RIAKEEEWRK 300 QETAKYERDV HEFWAKERAW VETRDAMIME ALRKYTGEGT YNNSGKDDIA KEIGSDHSKN 360 YPRWTEQEVT SLIQLKTSLE QTFKESEYLK EEGVWEEIAA NMGXLGYTRS GGECKEKWEN 420 ESVCFKMTTE SNKMHKQDTK TNNMYFSQIS CYEEGHEVRN RRQDGMGLQL MDEGLSPSCS 480 NMDVNSSSLH IPFNGGENLW DERDSYVTXS LRNKRLLHW

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MXSSDVVPAA GLLDNHRYTS MITTTACHPT TSSAASAAAA LYGIEFEHGW NNIDGANTNN  60
NSRWPRQETL TLLEIRSALD SKFKETNQKG PLWDEVSRIM AEEHGFQRTG KKCKEKFENL  120
YKYYKKTKEG KTGRQDGKHY RFFRQLEAIY GNHHQSTNQS SFYSRSNPLL CHTTPSDSIN  180
RDQNQEVVVQ DQKLISYESL SFSNNSTEFD QTSPSKNKDD DDSLSAIDYF PMNQSTGSLK  240
NEKKSYATSV KKKWKAKVVD FMNSQMGKVI KTQEALMEKM VKSIEASADE RIAKEEEWRK  300
QETAKYERDV HEFWAKERAW VETRDAMIME ALRKYTGEGT YNNSGKDDIA KEIGSDHSKN  360
YPRWTEQEVT SLIQLKTSLE QTFKESEYLK EEGVWEEIAA NMGXLGYTRS GGECKEKWEN  420
ESVCFKMTTE SNKMHKQDTK TNNMYFSQIS CYEEGHEVRN RRQDGMGLQL MDEGLSPSCS  480
NMDVNSSSLH IPFNGGENLW DERDSYVTXS LRNKRLLHW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008345531.2	0.0	trihelix transcription factor PTL-like
TrEMBL	A0A498KH81	0.0	A0A498KH81_MALDO; Uncharacterized protein
STRING	XP_008345531.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2022	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	6e-78	Trihelix family protein

Link Out ? help Back to Top
Phytozome	MDP0000293078