PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000291132
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 655aa    MW: 72539.4 Da    PI: 9.5623
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000291132genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.7e-12273319455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++++k+Lq
  MDP0000291132 273 DHIMAERKRREKLSQRFMALSAIVPGL-----KKMDKASVLGDAIKHVKQLQ 319
                    699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.123269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-16273330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9273319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15273330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.94E-13274323No hitNo description
SMARTSM003532.7E-14275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MEFQKTNSGF RFGMSNNHRR DLRFSAPPPT VLAAKTRVLT RKSPRADRGS WLGFGSGRIQ  60
CFKEVQGRRG MMTTTNKVYM VVLVSKLVLT LIEFKFNTYL GMDYSFIPQC HLNGLDEGFN  120
AHDIGTALGE NFKHSFSESY SSYSTLTTKN TTTTTTIASS GSSINETSHG TSFESPAKLL  180
KTSSWNSSIT ENVSPKPCSS SSQILSFENL NSPLPSNPQK FCNKFEPALK SKDEAPSQIN  240
MQFSHAQDYE AKGCSQGTKR PCPTSRTPSH AQDHIMAERK RREKLSQRFM ALSAIVPGLK  300
KMDKASVLGD AIKHVKQLQE RVKVLEERSK KRTVESVVFV KKSQLSADDD TSSCDENFDG  360
CSPDEAALPE IEARVSEKDV LIRIHCEKQK GVVVKILSEI EKLQLSVVNS SIFPFGASTL  420
DITIMSQMDD GFNMTVKDLA RKLRVALLTF IGTPRVYASP IHSYSTTLAE GNLTYEVTDL  480
TAEYLNNDEV IISATKAPAS KPRRERKSCE DKKVIKNVDS IQVSHHVYAM LLGNQILTSN  540
PDLAMQANVV FLPLLVFMKT IPSSFILTFF LPASGYPSHT IMRLQRCCFL RPIRVWQLFG  600
ATCPIIVSVF NKTMSTALGT TRPGGKVCLV GMDHGVLDPF TPAAARKCVA FSMGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13273336869Transcription factor MYC2
5gnj_B1e-13273336869Transcription factor MYC2
5gnj_E1e-13273336869Transcription factor MYC2
5gnj_F1e-13273336869Transcription factor MYC2
5gnj_G1e-13273336869Transcription factor MYC2
5gnj_I1e-13273336869Transcription factor MYC2
5gnj_M1e-13273336869Transcription factor MYC2
5gnj_N1e-13273336869Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277282ERKRRE
2278283RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028952287.10.0transcription factor bHLH18-like
RefseqXP_028952288.10.0transcription factor bHLH18-like
TrEMBLA0A498HL970.0A0A498HL97_MALDO; Uncharacterized protein
STRINGXP_008383369.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-72bHLH family protein