PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000286143
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 404aa    MW: 45908.2 Da    PI: 8.8523
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000286143genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-181764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ll ++v+++G g+W++++r  g++R +k+c++rw +y+
    MDP0000286143 17 KGPWTPEEDKLLSEYVTLHGEGRWSSVSRSTGLNRNGKSCRLRWVNYM 64
                     79********************************************97 PP
2Myb_DNA-binding49.31.2e-1570114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
    MDP0000286143  70 RGHITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNFWRTH 114
                      6778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7981264IPR017930Myb domain
SuperFamilySSF466896.36E-3014111IPR009057Homeodomain-like
SMARTSM007177.0E-151666IPR001005SANT/Myb domain
PfamPF002494.1E-161763IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-221871IPR009057Homeodomain-like
CDDcd001673.64E-101964No hitNo description
PROSITE profilePS5129424.3565119IPR017930Myb domain
SMARTSM007174.8E-1469117IPR001005SANT/Myb domain
PfamPF002491.4E-1370114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2372118IPR009057Homeodomain-like
CDDcd001672.57E-974115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MVAMMGWGGV GEQGWRKGPW TPEEDKLLSE YVTLHGEGRW SSVSRSTGLN RNGKSCRLRW  60
VNYMRPGLKR GHITPQEEGI IIELHALWGN KWSTIARYLP GRTDNEIKNF WRTHFKKKEK  120
CTQKQEKRKA EILKAKQQQL EEDQNTKARA TAPHDHWEAC SQGTISNMNN IDIHETQATW  180
QENMEEDKYC LPKLMHQASV EFWSDLLGEE GFYKLWNLDD QFLALRKGKQ GHRTKQMDNI  240
TASELAGFGV GTLLLCATIA APKIDAFISA SQRSSLGMCK RCGNLRMIAC SRCRGVGLIK  300
EGEMLGSNLI DDMYESLGGE GSKVSTPFPY DRNCSYKLHP FFHGPRALSH VQLRPAFEFG  360
SKNTRGRTEH FTVRRVNAGT VVSLSPSIMS VTWYCSDPEW AVDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22171187107B-MYB
1h8a_C1e-221711827127MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017179485.11e-164myb-related protein 340-like
TrEMBLA0A498HFR21e-162A0A498HFR2_MALDO; Uncharacterized protein
STRINGXP_008342049.11e-161(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.13e-63myb domain protein 121