PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000282090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 282aa MW: 30971.5 Da PI: 8.2179 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00035 | 110 | 132 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H MDP0000282090 110 FSCNYCHRKFYSSQALGGHQNAH 132 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.86E-6 | 107 | 137 | No hit | No description |
PROSITE profile | PS50157 | 11.406 | 110 | 137 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 112 | 132 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MEPAKNYETN IFLVAEAPPC PNTPLQDPKE TKQKLRVEED EEEMKDQEKE KKPSIRIIDL 60 EASDSNSNRG FSFDNPELNL LECLETGSSE GTTTTTTTTL VSDAAEPRVF SCNYCHRKFY 120 SSQALGGHQN AHKRERTLAK RGQRMLGSHI MASAAGFGYP YYSSLASLPL HGGAFRALDI 180 XAHSTIHKPS SMMPSSAIRF GGSYGHRSFG SRSLFDQQPA VGKLAAAATR GVGGAGRFDM 240 AKSNMVSQSS EEIGKCWLGN DSRFKNSSDQ EKMKKLDLSL KL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008347496.2 | 0.0 | zinc finger protein 1-like | ||||
TrEMBL | A0A498JC97 | 0.0 | A0A498JC97_MALDO; Uncharacterized protein | ||||
STRING | XP_008347496.1 | 0.0 | (Malus domestica) | ||||
STRING | XP_008357277.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1439 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25160.1 | 5e-40 | zinc finger protein 3 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000282090 |