PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000281784
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 433aa    MW: 48700.4 Da    PI: 9.0463
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000281784genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.5e-1683142155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  MDP0000281784  83 SRFRGVSRHRWTGRYEAHLWDkGSWNPtqrKKgKQVYLGAYDEEESAARAYDLAALKYWG 142
                    789******************988855556447*************************98 PP
2AP254.62.7e-17185236155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV +++ +grW+A+I   +   g +k+ +lg++gt eeAa a++ a+ +++g
  MDP0000281784 185 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAAHAYDIAAIEYRG 236
                    89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.62E-1983151No hitNo description
PfamPF008474.6E-1283142IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-1683151IPR016177DNA-binding domain
SMARTSM003807.5E-2584156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-1584150IPR001471AP2/ERF domain
PROSITE profilePS5103219.57284150IPR001471AP2/ERF domain
PRINTSPR003673.3E-58596IPR001471AP2/ERF domain
PfamPF008477.6E-13185236IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-17185246IPR016177DNA-binding domain
CDDcd000188.20E-24185246No hitNo description
SMARTSM003801.2E-24186250IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17186245IPR001471AP2/ERF domain
PROSITE profilePS5103218.465186244IPR001471AP2/ERF domain
PRINTSPR003673.3E-5226246IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDLATSAVKS ELISPRRRPL CTIEVDALVS KCVKRRRRDS SAVAAAPAPG NTDQQGDQRL  60
KQQAQADQSP TSTTTTTTVK RSSRFRGVSR HRWTGRYEAH LWDKGSWNPT QRKKGKQVYL  120
GAYDEEESAA RAYDLAALKY WGTSTFTNFP VPDYESEIEI MNTLTKEEYL ASLRRRSSGF  180
SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYGTQ EEAAHAYDIA AIEYRGINAV  240
TNFDLSTYIR WLRPGANSLG PQEPKSNPDQ PLPMPTSSNG VPLRKEGRQM SMFQPNSFAV  300
DDKDASKNHD IFPRQQQPPM PVSPCPKSSP SPTALGILLQ SSIFKELVEK NLNGDNEESE  360
KNDLNLLPEQ NNSDNIKRTL YEGMRNNPFT CSSNNCVLPA LESQEESLLP LCNSRDQPLW  420
NGVLNMFTSP DFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11537RRRPLCTIEVDALVSKCVKRRRR
2108116PTQRKKGKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008390063.20.0AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A498IC600.0A0A498IC60_MALDO; Pectate lyase
STRINGXP_008390063.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-78AP2 family protein