PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000279197
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 346aa    MW: 39696.6 Da    PI: 5.1458
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000279197genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM132.92.2e-41181442128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                    p+GfrF Pt  elv++yLk k ++k+++  ++i+e+d+++++PwdL +++ +++  wyfFs++d ky +++r+nr+t  g Wk tgk+++++++ +
  MDP0000279197  18 PVGFRFXPTPXELVDHYLKLKKQDKDFKX-DHIAEFDVCNFDPWDLAARIPSDDMVWYFFSRKDYKYINSNRSNRTTPGGHWKITGKERAIKARrS 112
                    89**************************9.89**************99999999**************************************9856 PP

            NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                    ++l+g k+tL+fy   +pk++ktdWvmhe+ l
  MDP0000279197 113 KALIGKKRTLTFYXRCQPKPKKTDWVMHEFYL 144
                    667**************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-4815167IPR003441NAC domain
PROSITE profilePS5100545.27117168IPR003441NAC domain
PfamPF023651.1E-2118143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGTLGXNRKX RXGGASDPVG FRFXPTPXEL VDHYLKLKKQ DKDFKXDHIA EFDVCNFDPW  60
DLAARIPSDD MVWYFFSRKD YKYINSNRSN RTTPGGHWKI TGKERAIKAR RSKALIGKKR  120
TLTFYXRCQP KPKKTDWVMH EFYLXDSEAI SNPKLHQKDF VLCRMKKNSD MEDTSIGEVE  180
LGSYSVSNVE DXAAAVVTPE VRMRTVSSLN IFLXDVDLLK LNASLFHALH SQDYSSSTFL  240
SSGYIELGDI PHGNDNIDDC NAMQSPFGYN NYXYPDKNDI STCDEGEPPG LTMSDFENEV  300
LDHMSQEVCP PREENLELFF YPPQPEDYTL EPLMNMTVGX VLHDNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-291617216170NO APICAL MERISTEM PROTEIN
1ut4_B2e-291617216170NO APICAL MERISTEM PROTEIN
1ut7_A2e-291617216170NO APICAL MERISTEM PROTEIN
1ut7_B2e-291617216170NO APICAL MERISTEM PROTEIN
3swm_A2e-291617219173NAC domain-containing protein 19
3swm_B2e-291617219173NAC domain-containing protein 19
3swm_C2e-291617219173NAC domain-containing protein 19
3swm_D2e-291617219173NAC domain-containing protein 19
3swp_A2e-291617219173NAC domain-containing protein 19
3swp_B2e-291617219173NAC domain-containing protein 19
3swp_C2e-291617219173NAC domain-containing protein 19
3swp_D2e-291617219173NAC domain-containing protein 19
4dul_A2e-291617216170NAC domain-containing protein 19
4dul_B2e-291617216170NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340841.20.0PREDICTED: NAC domain-containing protein 14-like
TrEMBLA0A498KME30.0A0A498KME3_MALDO; Uncharacterized protein
STRINGXP_008360312.11e-139(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14450518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.34e-35NAC transcription factor-like 9