PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000278770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 335aa MW: 38616.8 Da PI: 10.5075 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.9 | 4e-21 | 137 | 182 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 n+sn qvtfskRr g++KKA+EL++LC+aev +i+fs+ +++ + MDP0000278770 137 ANESNLQVTFSKRRSGLFKKASELCTLCGAEVGIIVFSPGRRVFSF 182 599***********************************99888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-30 | 126 | 185 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.619 | 126 | 186 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.78E-32 | 127 | 195 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-26 | 127 | 208 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-17 | 128 | 148 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-23 | 136 | 182 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-17 | 148 | 163 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-17 | 163 | 184 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MEVLNRIYVE VVGPKKRNQV RGFGLGVAWA DVPRIVTKQR GISREVKYLR EAYEAHKQAI 60 AVVEEKVTRM MHERFFADVL FRNVAKARYH LQRFLSQKKI FLKLCDSAIY VYTLDYICLA 120 MAKKSKGRQK VEMVKMANES NLQVTFSKRR SGLFKKASEL CTLCGAEVGI IVFSPGRRVF 180 SFGHPSVEAV MDRFLSRNPF NPHLHPPSGT MQLIEAHRNA TVRELNTDLT QVMNQLEAEK 240 KRRDQLNQMT RVSQAQCWWE APVDEMQMPQ LDQLKSSLVD LKMNMTKQAD RVLIQNTLNP 300 NSQFFVGSSS QQPVMPPHNF PHPNAWNHPG HGRFF |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028959276.1 | 1e-160 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 6e-71 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A498JPL8 | 1e-137 | A0A498JPL8_MALDO; Uncharacterized protein | ||||
STRING | XP_008364432.1 | 1e-160 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-73 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000278770 |
Publications ? help Back to Top | |||
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