PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000276691
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 397aa    MW: 45200.7 Da    PI: 4.4656
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000276691genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.32.6e-15163247286
       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    Wt++e+ +L++a  ++  + ++++l+   W+ev++k++e  ++er+ +qC+++++ l+k+ykk+++   + t +++s+++yf++++
  MDP0000276691 163 WTEHETFVLLDAWGDRFLQRGKKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKERAKFXE-TGGATSKWVYFSKMD 247
                    *************************************762678************************998.689999********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.9E-22162249No hitNo description
Gene3DG3DSA:1.10.10.601.9E-4163227IPR009057Homeodomain-like
PROSITE profilePS500906.319163220IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDDTEDDARY PPNLYGGNHQ QGYGSSQRPK LPARGGGPYP RPVRNDYADD DEEDETDDDE  60
ELGEEEEDNN GRNGFPSVHK GVGDDDHXDD SDDEDDEDDE EDNKMMVRRL DDDDLKTHPK  120
KRKLKSLISS YEFAPRLPAP PPAAAAPSAP KQSIGGRNAL TDWTEHETFV LLDAWGDRFL  180
QRGKKSLRSE EWQEVAEKVS EVSKIERTDT QCRNRLDTLK KKYKKERAKF XETGGATSKW  240
VYFSKMDMLM SSLQQQAGLS CGLDSGEYVF MNPKVYLNRA NGLDEMRDSP GNSESAEGGD  300
DDSDGLPPKK RRYGRENDDR GSFRLLADSI QKFSDIYEKI ENSKRKQMAE LEKMRMDFHR  360
DLELQKRQIM ERAQAEIAKI QHGDDEENDN SAENASG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114122LKTHPKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008342714.20.0trihelix transcription factor ASIL2-like
RefseqXP_008342715.20.0trihelix transcription factor ASIL2-like
TrEMBLA0A498HFJ50.0A0A498HFJ5_MALDO; Uncharacterized protein
STRINGXP_008342714.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.13e-73Trihelix family protein