PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000276468

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 265aa MW: 30083.7 Da PI: 6.7516

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000276468	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.3	2.2e-27	62	150	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y++YA++vGF++r+ + ++s+r+g+i +r+f C+keg+r+++k+k+ + rr+r+etr gCka+++ +kek+gkw+vtkle H H++ MDP0000276468 62 EYYDAYATRVGFRIRVGNFHRSNRDGSINSRKFLCNKEGFRNNKKSKRGEVRRSREETREGCKAMIMARKEKSGKWVVTKLEIRHCHPM 150 69*******************************************9*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.4E-25	62	150	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MESEADLNKP VVESSVERDV PNNESGEMLD SNNGTELIEN DVNGILEPYV GMEFDSEEAV 60 KEYYDAYATR VGFRIRVGNF HRSNRDGSIN SRKFLCNKEG FRNNKKSKRG EVRRSREETR 120 EGCKAMIMAR KEKSGKWVVT KLEIRHCHPM WISRGKKVTI PAPSQDEKDK KIRELSAELY 180 RANQQLAECR KTLEMVLKEC DSSCCMLAGC SRRLREKMRQ SMATGEDEAV DGYGRRSAST 240 ATEEDEEEER AAAENGCLTG RKSSG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028958232.1	1e-147	protein FAR1-RELATED SEQUENCE 7-like isoform X2
TrEMBL	A0A498JR76	1e-138	A0A498JR76_MALDO; Uncharacterized protein
STRING	XP_008374575.1	1e-146	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-46	FAR1 family protein

Link Out ? help Back to Top
Phytozome	MDP0000276468