PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000276468
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 265aa    MW: 30083.7 Da    PI: 6.7516
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000276468genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR187.32.2e-2762150189
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                    ++Y++YA++vGF++r+ + ++s+r+g+i +r+f C+keg+r+++k+k+ + rr+r+etr gCka+++ +kek+gkw+vtkle  H H++
  MDP0000276468  62 EYYDAYATRVGFRIRVGNFHRSNRDGSINSRKFLCNKEGFRNNKKSKRGEVRRSREETREGCKAMIMARKEKSGKWVVTKLEIRHCHPM 150
                    69*********************************************9***************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.4E-2562150IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MESEADLNKP VVESSVERDV PNNESGEMLD SNNGTELIEN DVNGILEPYV GMEFDSEEAV  60
KEYYDAYATR VGFRIRVGNF HRSNRDGSIN SRKFLCNKEG FRNNKKSKRG EVRRSREETR  120
EGCKAMIMAR KEKSGKWVVT KLEIRHCHPM WISRGKKVTI PAPSQDEKDK KIRELSAELY  180
RANQQLAECR KTLEMVLKEC DSSCCMLAGC SRRLREKMRQ SMATGEDEAV DGYGRRSAST  240
ATEEDEEEER AAAENGCLTG RKSSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028958232.11e-147protein FAR1-RELATED SEQUENCE 7-like isoform X2
TrEMBLA0A498JR761e-138A0A498JR76_MALDO; Uncharacterized protein
STRINGXP_008374575.11e-146(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24533072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.11e-46FAR1 family protein