PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000276278
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 622aa    MW: 70295.2 Da    PI: 9.977
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000276278genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.75.8e-333524921128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 
                    lp+G++F+Ptd+e++  +L++kv +++      ++  e   +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      +
  MDP0000276278 352 LPAGVKFDPTDQEIL-LHLEAKVLSDTrklhplID--EfipTLEGEnGICYTHPEKLP-GVNKDGQIRHFFHRPSKAYTTGTRKRRKVHteedgsE 443
                    799***********9.88****9999956644322..22222333336**********.666777788******************7444465557 PP

            NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     +W++tgk+++vl+ +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  MDP0000276278 444 TRWHKTGKTRPVLV-GGAVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 492
                    78************.9*************66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.200.203.3E-1522131No hitNo description
SuperFamilySSF561122.67E-2643187IPR011009Protein kinase-like domain
PROSITE profilePS5001111.08667340IPR000719Protein kinase domain
PfamPF077141.2E-1171185IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
Gene3DG3DSA:1.10.510.103.9E-8132185No hitNo description
SuperFamilySSF1019411.15E-37346511IPR003441NAC domain
PROSITE profilePS5100533.82352511IPR003441NAC domain
PfamPF023652.0E-14353492IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MKKHGKDVAY LFIISMLCTS TVVLGIVLTL ILLCKKKPVQ TQETPPQTKP SAQVYLLTDI  60
DVATDGFNPR RIVGEGRLGT VYAAIFEKGE IAAVKRIHSR HVLSNAGFGF CRILRSISLA  120
QHPNIVPIIG YSEGPGERII VMEFVGMVCL DYYLHQNPDG ASLLDWNHRL KIAAGAAKGL  180
EYLHEGVTAK HNTWGLRLWA LIFGSPREER PIGMRGRRVL GRWGRRRRRR RRLQGERRVR  240
IWCGFVGAFE WEKKQAFNWS SGNHFEQFGD GLKVEEITKR FGVWNEPQRK NGRDQIMTWC  300
NDSDDERAIQ IVSPPPPNNP NNPNEFRNIT CPSCGHHIEF QDQAGIHDLP GLPAGVKFDP  360
TDQEILLHLE AKVLSDTRKL HPLIDEFIPT LEGENGICYT HPEKLPGVNK DGQIRHFFHR  420
PSKAYTTGTR KRRKVHTEED GSETRWHKTG KTRPVLVGGA VKGFKKILVL YTNYGRQRKP  480
EKTNWVMHQY HLGNNEEEKD GELVVSKVFY QTQPRQCGSS IKDVPTFDHH KGVNIRSGQG  540
NDGLISAAAT NPLPLAKKAG LVEYYNPGGP FMNYDHHQHN HNQGGHNRES PPQLIPNLVV  600
QGDGSSFVRL TSDASKGKLE RK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4oh4_A6e-165718434159Protein BRASSINOSTEROID INSENSITIVE 1
4oh4_B6e-165718434159Protein BRASSINOSTEROID INSENSITIVE 1
4q5j_A6e-165718434159Protein BRASSINOSTEROID INSENSITIVE 1
4q5j_B6e-165718434159Protein BRASSINOSTEROID INSENSITIVE 1
5lpb_A4e-16571889138Protein BRASSINOSTEROID INSENSITIVE 1
5lpv_A4e-16571889138Protein BRASSINOSTEROID INSENSITIVE 1
5lpw_A4e-16571889138Protein BRASSINOSTEROID INSENSITIVE 1
5lpy_A4e-16571889138Protein BRASSINOSTEROID INSENSITIVE 1
5lpz_A6e-16571849134Protein BRASSINOSTEROID INSENSITIVE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216232RRVLGRWGRRRRRRRRL
2221230RWGRRRRRRR
3223232GRRRRRRRRL
4224231RRRRRRRR
5225231RRRRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.222261e-176leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981190.0KF198119.1 Malus hupehensis NAC domain protein (NAC43) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008371419.10.0NAC domain-containing protein 73
TrEMBLA0A498JYR60.0A0A498JYR6_MALDO; Uncharacterized protein
STRINGXP_008371419.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-121NAC domain containing protein 73