PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000275844
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 424aa    MW: 48445 Da    PI: 9.1401
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000275844genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.3e-07118165354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +  rE+ RRdr+N+ f eL  +l ++     +K++Ka+i   +++ +k+L
  MDP0000275844 118 IQKADREKLRRDRLNEQFLELGNVLDPD----RPKNDKATIIADTIQALKDL 165
                    56789*******************9997....79*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.258115165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-6116158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.09E-5116169No hitNo description
SuperFamilySSF474592.62E-11116184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-5118165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-4121171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.3503.6E-5159214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MPGGTGRLRV CHQRSKKTTF WQIRFARYKL HLDTTPENNV LPSILFIYFL HHVDRLSLSL  60
MDQLKHENFN QSAQPPFSFA AEFPQPASDR RLPPTRSQPN SSQRPEGEVX DCLTARKIQK  120
ADREKLRRDR LNEQFLELGN VLDPDRPKND KATIIADTIQ ALKDLTLEVD KLKSECVSLT  180
EESRELTHEK NDLREEKASL KSDIEDLNAQ YQQRLRTMFP WGAMDHSVVM APPSYPYPMP  240
MTMPMPMPMQ MPPRPMPMHP HMQPYHYFGN QNPGVIPNPC STYLPYITPN TLVEQQSTQY  300
VSPVVHPGSQ SQVSGKQDAI NKSPGESQVH KSEDSIDVTT ELELKTPGST SDQIFWDKFK  360
RKRVVIVNLV RLRSKRGKIR DGTGAVIGET IWRTLNAERD TRVGCLHCMN TKKCPMNATN  420
SING
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.137440.0fruit| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028958015.10.0transcription factor bHLH121
SwissprotQ9LT231e-88BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A498JQ950.0A0A498JQ95_MALDO; Uncharacterized protein
STRINGXP_009346632.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.21e-81bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]