PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000273574
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 339aa    MW: 36303.1 Da    PI: 8.9005
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000273574genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.9e-11280325655
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  MDP0000273574 280 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 325
                    689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.005274324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-13277335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-11278329No hitNo description
Gene3DG3DSA:4.10.280.102.1E-11279329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-8280325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-12280330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAPRPSTTGL TRYGSAPGSL LNSAVDSVMG AAADREFSSL RPQHLRGHYF SGDGGGDSPS  60
LTGSESSFKV NSSNGSHRDT STTKPLLQSH GLNEIGSSNS SSCSSTSSAA LVRQRSSPAG  120
FFSHLTAPEN NGGFSVTRGT GSYRSQGGNN GGHGVTRLKS QLSFTGQDSL SQISEVSEIA  180
GEGVSSDNGH HSAMHSYPAT SFGMESWDNT NSIVFSAPPS KRAKNMDGDI FNCLNALESQ  240
FSLPQTSLEM ATVEKLLHIP EDSVPCKIRA KRGCATHPRS IAERERRTRI SGKLKKLQDL  300
VPNMDKQTSY ADMLDLAVQH IKGLQNQIQV RLHIYEQRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.268920.0leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008380690.10.0transcription factor bHLH128
SwissprotQ8H1023e-93BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A498K4W70.0A0A498K4W7_MALDO; Uncharacterized protein
STRINGXP_008380690.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-94bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]