PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000267178
Common NameBHLH9
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 320aa    MW: 36074.6 Da    PI: 4.6838
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000267178genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.2e-13123174155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +r++h ++Er+RR+++N+ ++ Lr+++P++   + ++ + a+i   A++++k+L+
  MDP0000267178 123 QRMTHIAVERNRRKQMNEYLSVLRSIMPES---YVQRGDQASIIGGAINFVKELE 174
                    79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.02E-12121178No hitNo description
SuperFamilySSF474594.71E-16121194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.116122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-14122178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-9128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MALEAVVFPQ DPFSCTNKDL YNLLGGNLSY VDDQQQASLD FLGYQTDQNY PNYDTYSSPP  60
SMVSHFNELH LSNPNPVAST INPDGDQPEF QLPLEDTINV SSSTRAKRRR AKSKKNEEEI  120
ENQRMTHIAV ERNRRKQMNE YLSVLRSIMP ESYVQRGDQA SIIGGAINFV KELEQEVQFL  180
GVQKPNNCAP FSEFFTFPQY STRSTSDHES TVAAMAELPL LECRSSNIAA DIEVTMVESH  240
ASLKVRSKRL PKQLLKIVSG LHDMHLTVLH LNVVTADDIV LYSLSLKVED ECMLTSVDEI  300
ATAVHEMLAR IQEEAMLDLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123134RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.129390.0bud| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001281057.10.0transcription factor bHLH96-like
RefseqXP_028956550.10.0transcription factor bHLH96-like isoform X1
SwissprotQ9C7T43e-79BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A498K1460.0A0A498K146_MALDO; Uncharacterized protein
STRINGXP_008370513.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-79bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]