PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000257669

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Trihelix

Protein Properties

Length: 428aa MW: 48802 Da PI: 6.5196

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000257669	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.1	3.8e-26	73	154	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rr + ++++k++k+lWe++s+kmr++gf rsp++C++kw+nl k++kk k+++++ s +++y++++e MDP0000257669 73 WVQDETRSLIALRRGXDGLFNTSKSNKHLWEQISAKMRQKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGS---GSAKMSYYKEIE 154 ******************************************************************84...556899*997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.142	65	129	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.3E-4	65	134	IPR009057	Homeodomain-like
CDD	cd12203	1.21E-27	71	136	No hit	No description
Pfam	PF13837	2.9E-20	72	156	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MYLSENARPI DFYKEEAGRD MMMEVVVSNE DLPQSQSQSQ AHLHQPPPQQ MLMGDSSGED 60 HXVRAPKKRA ETWVQDETRS LIALRRGXDG LFNTSKSNKH LWEQISAKMR QKGFDRSPTM 120 CTDKWRNLLK EFKKAKHHDR GSGSAKMSYY KEIEEILKER SKNTQXKSPT PPKVDSFVXF 180 SDKGIGQWGD LSFDLRCFNX PYQERNRPCN SGXTAAQIRN FFDGFSAHAG IEDASISFAP 240 VEASGRPALN LERRLDHDGH PLAITAADAV TAGGVPPWNW RETPGNGGEG QAYGGRVILV 300 NWGDYTRRIG IDGTADAIKD AIKSAFRLRT KRSFWLEDED QIVRSLDRDM PLGNYTLHLD 360 EGVAIKVCLY DESDHIPVHT EEKLFYTEED YREFLSRRGW SCLREFDGYR NIENMDDLRP 420 GAIYRGVS

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MYLSENARPI DFYKEEAGRD MMMEVVVSNE DLPQSQSQSQ AHLHQPPPQQ MLMGDSSGED  60
HXVRAPKKRA ETWVQDETRS LIALRRGXDG LFNTSKSNKH LWEQISAKMR QKGFDRSPTM  120
CTDKWRNLLK EFKKAKHHDR GSGSAKMSYY KEIEEILKER SKNTQXKSPT PPKVDSFVXF  180
SDKGIGQWGD LSFDLRCFNX PYQERNRPCN SGXTAAQIRN FFDGFSAHAG IEDASISFAP  240
VEASGRPALN LERRLDHDGH PLAITAADAV TAGGVPPWNW RETPGNGGEG QAYGGRVILV  300
NWGDYTRRIG IDGTADAIKD AIKSAFRLRT KRSFWLEDED QIVRSLDRDM PLGNYTLHLD  360
EGVAIKVCLY DESDHIPVHT EEKLFYTEED YREFLSRRGW SCLREFDGYR NIENMDDLRP  420
GAIYRGVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	1e-51	67	152	1	86	DNA binding protein GT-1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.13098	0.0	bud\| flower\| fruit\| leaf\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009359290.1	0.0	PREDICTED: trihelix transcription factor GT-1 isoform X2
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A498HL35	0.0	A0A498HL35_MALDO; Uncharacterized protein
STRING	XP_008340157.1	0.0	(Malus domestica)
STRING	XP_008368267.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6817	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Link Out ? help Back to Top
Phytozome	MDP0000257669

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]