PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000256881

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Dof

Protein Properties

Length: 318aa MW: 33210.7 Da PI: 7.3916

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000256881	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.2	1.8e-38	31	91	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rkn k+s MDP0000256881 31 EQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGTRKNAKRS 91 57889****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	28	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.6E-33	33	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.255	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type
Gene3D	G3DSA:3.20.20.80	8.8E-6	273	317	IPR013781	Glycoside hydrolase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MPSDSGDQQQ NNSQNRRTVK ATQATGAPPP EQEHLPCPRC DSTNTKFCYY NNYNFSQPRH 60 FCKSCRRYWT HGGTLRDIPV GGGTRKNAKR SRTAASVATT TTXSDNDPIS ATPFFLNPGV 120 GAALQLSDLK GSMGNGCGGG GGSGSFTSLL NTHGPGGFLA LGGFGLGLAG GFEEMGFGLG 180 RAVWPFPGMG GDGVAGGAHG GMMNMWQLEN GEGGGIVNVG VGPVGAEFCS WPELAISTPG 240 NGLNNVRFNV KLQEXKELEL TMADKLTTFP PDKALKGSGI QVILGTLNAD VPTLANDPAY 300 ANVWLQTNVI PFASSVNL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.11933	0.0	bud\| fruit\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Constitutively expressed in the whole plant. {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:8718629}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP662922	4e-73	KP662922.1 Cajanus cajan Dof38 (Dof38) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008352485.2	1e-177	dof zinc finger protein DOF3.4-like
Swissprot	Q39088	2e-55	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	A0A498I2E5	1e-176	A0A498I2E5_MALDO; Uncharacterized protein
STRING	XP_008352485.1	1e-176	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	1e-37	OBF binding protein 1

Link Out ? help Back to Top
Phytozome	MDP0000256881

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]