PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000254781 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | CPP | ||||||||
Protein Properties | Length: 807aa MW: 88364.3 Da PI: 8.0168 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 43.8 | 5e-14 | 182 | 220 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnCk+s+Clk+YCeCf ag +C+ C+C++C+N+ + MDP0000254781 182 KQKQCNCKNSRCLKLYCECFTAGIYCEG-CNCSNCHNNVD 220 89*************************9.********986 PP | |||||||
2 | TCR | 51.2 | 2.4e-16 | 266 | 305 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e MDP0000254781 266 RHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 305 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.4E-16 | 181 | 221 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.024 | 182 | 306 | IPR005172 | CRC domain |
Pfam | PF03638 | 5.1E-11 | 183 | 218 | IPR005172 | CRC domain |
SMART | SM01114 | 5.7E-20 | 266 | 307 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.7E-12 | 269 | 304 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 807 aa Download sequence Send to blast |
MRIWEANCAC WHLNLLEING AERNGLRSRA QEIGEAIGFH DAVSIVXECG GAGRTATAXD 60 TVSGAAAATN LTGKTTVAFA FTVAAAGGGP FPEAINAAAG DSAVSGSAES RAARKRSDSA 120 PGAQAFASEF IWLNLVLNIG NVEIGFDVVP NLSCGRKVVQ NCKQESPLSR QRGDGKDCTP 180 KKQKQCNCKN SRCLKLYCEC FTAGIYCEGC NCSNCHNNVD NEAARQDARG AILERNPNAF 240 QPKIASSPQE SRDGREDAGE IQAAGRHNKG CHCKKSGCLK KYCECFQANI LCSENCKCMD 300 CKNFEGSEER RALYHEGXNT VAYMQQANAA ISGAIGTSGY GTPLVSRKRK GYELYFTTGN 360 QSTHPIAQSQ QENHLRPPMT SSSQLSVPIF HAANAAVSRP SKTTIYRTLL EPYCPNGLSQ 420 DDKFLGNRQR ETIXKTNATS STQEGNXHKT EHDKQHDDHD LIGVNQADRD ASRFSGSNGG 480 DVQDSRPMSP GTLALMCDEQ DKMFMEAGLP NGAXTDNPSM PQKXTQDIGF TEVYVEQERL 540 VLTGFRDCLN HLITRGSIKE TMCSPQAKRE RVSXKESVQV GTAKPTTEPR YQKEAYSNDI 600 VKSPLSSANG KILQPVTTVT SXDNDLTLKG WKPGNLVEEL EKANPMKALF PEAIPCHIIN 660 NIRFWRKRQQ RDEDPFTHHC SSTTSAIQLT KDHARTRATS SVPXSHTCLS VPPSPPKLSC 720 NYRPKSQARS SRSKLSDCDV SEMEEARKLR SEFLQVLRSR RSGEVPMXVE PAKPVANPLF 780 QEANPPSFSE VRIWFPFGNA LYQFGTA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 7e-29 | 183 | 315 | 11 | 132 | Protein lin-54 homolog |
5fd3_B | 7e-29 | 183 | 315 | 11 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.30342 | 0.0 | bud| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 7e-40 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028949716.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
TrEMBL | A0A498HMG5 | 0.0 | A0A498HMG5_MALDO; Uncharacterized protein | ||||
STRING | XP_008361154.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2626 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-122 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000254781 |