PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000248470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | AP2 | ||||||||
Protein Properties | Length: 106aa MW: 11429.6 Da PI: 10.7224 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.7 | 2.5e-07 | 71 | 101 | 1 | 27 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...k 27 s y+GV++++++gr++A+++d ++n k MDP0000248470 71 SIYRGVTRHRWTGRYEAHLWDkSTWNHnqnK 101 57*******************6666433332 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MASSSSDPGP KTESGSGGGS GGGGVEASEA VIASDQLMVY RGVKKSKKER GCTAKERISK 60 MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNHNQN KKGKQX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028948770.1 | 4e-69 | AP2-like ethylene-responsive transcription factor At2g41710 | ||||
Swissprot | Q8GWK2 | 6e-46 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A498I3A4 | 1e-67 | A0A498I3A4_MALDO; Uncharacterized protein | ||||
STRING | XP_009363210.1 | 1e-67 | (Pyrus x bretschneideri) | ||||
STRING | XP_008392327.1 | 6e-71 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6007 | 29 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 4e-48 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000248470 |