PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000242554
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 657aa    MW: 73014.3 Da    PI: 8.0803
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000242554genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.3e-12289334454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YI++L
  MDP0000242554 289 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVVYINDL 334
                    799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.2E-2922193IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.79E-13283338No hitNo description
SuperFamilySSF474591.24E-16284350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.774285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-15289346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-9289334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-15291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MEEIISSCTS QKFCQENSPT LQRLQFIVQN RPEWWVYSIF WQPSKHXSDL VSLSWAGGHF  60
RSTRDLASKR SYHKHQPGFG FNVVEKKRAI SREVEALFHE DVDLDGGDVT DAQWFYFYTA  120
SLTQSFTAGH GNSNILGRDH ELQFYECERV KEARMHGIQT LVCIATSCGV LELASLDVIK  180
EDWGLLQLSK SLFESDNKNV VPKQLSSSRE DQVHVSLLES GMFSGADKEW ATQGRTKEAA  240
PANVSGSSSD SGPSDSVGNL TSENTENIRL KKRGRSSNRE TGRTESPINH VEAERQRREK  300
LNHRFYALRS VVPNVSRMDK ASLLSDAVVY INDLKARIGQ LEAKIHAQPQ KPGVDIGGQT  360
SSXVDHHQTR PRLSSSYNNS AAGAVEIDVK IVGSEAMIRV QCPDCNYPNA RLMNALKDLE  420
LQVYHASISS VKELMLQDVV ARVPKGFTSD EAMRIAILKR WTQTPFQTKL QLGQVQIDMG  480
SLGSKEFXVG WKKLLDRVGL GMNEDSVLQQ IAFGHDVSGN VGMKLCLTRQ VTEFNAATVE  540
DDGAGDRRRR QEEAGKKXQI EGVVNGWRKP DFGSLKLNCD EAWRKESRIC GVGWVLRHFA  600
GIPKMAGGKG GDRYLSPVMA EVVVIRQGLK MCVQSGLSES GGARSGNRFE GADSNAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-24285359481Transcription factor MYC2
5gnj_B4e-24285359481Transcription factor MYC2
5gnj_E4e-24285359481Transcription factor MYC2
5gnj_F4e-24285359481Transcription factor MYC2
5gnj_G4e-24285359481Transcription factor MYC2
5gnj_I4e-24285359481Transcription factor MYC2
5gnj_M4e-24285359481Transcription factor MYC2
5gnj_N4e-24285359481Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269275LKKRGRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.257380.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374121.20.0transcription factor MYC3-like
TrEMBLA0A498JL970.0A0A498JL97_MALDO; Uncharacterized protein
STRINGXP_008374121.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.19e-45bHLH family protein