PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000241840

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Dof

Protein Properties

Length: 444aa MW: 48036.5 Da PI: 8.9243

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000241840	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.5	1.5e-38	152	211	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++alkcprCds ntkfCyynny+lsqPr+fCkaCrryWtkGG lrnvPvGgg+rk k+s+ MDP0000241840 152 QHALKCPRCDSLNTKFCYYNNYNLSQPRHFCKACRRYWTKGGVLRNVPVGGGCRKTKRSK 211 6789****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	150	209	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.5E-33	153	209	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.562	155	209	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	157	193	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MLILMTQPSH PSFDDKLLAR EEVVKNSPLA FRNVAPSPPD SLLSADKIRV ADKAAIPLPS 60 RRPRVVNQRL DLIPLPRFHT ILIFVRPFRS FSALRALVSV AVSFACVVGR NCSLSTWVIE 120 MQDIHSVRGG GRFFGGSGGG DPRLRPHQHP NQHALKCPRC DSLNTKFCYY NNYNLSQPRH 180 FCKACRRYWT KGGVLRNVPV GGGCRKTKRS KTKNSSSSSP ISSPPPPPPQ PSSADQNKSS 240 SRSSSESSSL TNTTAAAATA ATEAVSEPSS TGSASNLLSN IHNPESNFFI SQGGANGGFE 300 PGASAAALLE HSTEINGIFS EIGSFTSLIT SSNDMPFSFG NINGSPFNQQ GNHDHNQVHQ 360 TQWGQQNQGV KMQEISGGLL DQTAQVDLSV FQNRSHVGGG GFGSLDWQPG SGDQGLFDLP 420 NTVDQAYWSH SQWTDQDHPT LYLP

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MLILMTQPSH PSFDDKLLAR EEVVKNSPLA FRNVAPSPPD SLLSADKIRV ADKAAIPLPS  60
RRPRVVNQRL DLIPLPRFHT ILIFVRPFRS FSALRALVSV AVSFACVVGR NCSLSTWVIE  120
MQDIHSVRGG GRFFGGSGGG DPRLRPHQHP NQHALKCPRC DSLNTKFCYY NNYNLSQPRH  180
FCKACRRYWT KGGVLRNVPV GGGCRKTKRS KTKNSSSSSP ISSPPPPPPQ PSSADQNKSS  240
SRSSSESSSL TNTTAAAATA ATEAVSEPSS TGSASNLLSN IHNPESNFFI SQGGANGGFE  300
PGASAAALLE HSTEINGIFS EIGSFTSLIT SSNDMPFSFG NINGSPFNQQ GNHDHNQVHQ  360
TQWGQQNQGV KMQEISGGLL DQTAQVDLSV FQNRSHVGGG GFGSLDWQPG SGDQGLFDLP  420
NTVDQAYWSH SQWTDQDHPT LYLP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.12388	0.0	fruit\| leaf\| root\| stem

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857254	3e-62	DQ857254.1 Glycine max Dof4 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001315882.1	0.0	dof zinc finger protein DOF5.4
TrEMBL	D9ZIX7	0.0	D9ZIX7_MALDO; DOF domain class transcription factor
STRING	XP_008374670.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5998	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	4e-38	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	MDP0000241840