PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000237091
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 234aa    MW: 25917 Da    PI: 8.2192
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000237091genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.11.1e-232168249
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                   + en   +qvtfskRr+gi+KKA ELSvLC+a+vavi+fs+ gk++ y
  MDP0000237091 21 KLENLNSKQVTFSKRRAGIFKKAAELSVLCGADVAVIVFSTAGKVFCY 68
                   5689999*************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.1E-331271IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.9831272IPR002100Transcription factor, MADS-box
CDDcd002651.03E-351380No hitNo description
SuperFamilySSF554557.46E-281382IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001468IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-221434IPR002100Transcription factor, MADS-box
PfamPF003191.7E-222268IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-223449IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-224970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVLLKNLPKK TQGRKRIEIK KLENLNSKQV TFSKRRAGIF KKAAELSVLC GADVAVIVFS  60
TAGKVFCYGH PSMDTILDWY CSGVTPPAVS DDTAGDQSPN RVPVAEFNKD YMEAIRELEE  120
QKKRVAEVKE AAKMKKVVMG VVGGCDERFW WEDESVDLDA LDVQEVEHYL IALEDVRKKV  180
AARFHEMKIL NGTLNPGALP PIPAVHRLCH LPMMTNGFSG HGGQFGGGYH GFGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-161393282Myocyte-specific enhancer factor 2B
1tqe_Q3e-161393282Myocyte-specific enhancer factor 2B
1tqe_R3e-161393282Myocyte-specific enhancer factor 2B
1tqe_S3e-161393282Myocyte-specific enhancer factor 2B
6byy_A3e-161393282MEF2 CHIMERA
6byy_B3e-161393282MEF2 CHIMERA
6byy_C3e-161393282MEF2 CHIMERA
6byy_D3e-161393282MEF2 CHIMERA
6bz1_A2e-1613101290MEF2 CHIMERA
6bz1_B2e-1613101290MEF2 CHIMERA
6bz1_C2e-1613101290MEF2 CHIMERA
6bz1_D2e-1613101290MEF2 CHIMERA
6c9l_A3e-161393282Myocyte-specific enhancer factor 2B
6c9l_B3e-161393282Myocyte-specific enhancer factor 2B
6c9l_C3e-161393282Myocyte-specific enhancer factor 2B
6c9l_D3e-161393282Myocyte-specific enhancer factor 2B
6c9l_E3e-161393282Myocyte-specific enhancer factor 2B
6c9l_F3e-161393282Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008344202.11e-175agamous-like MADS-box protein AGL62
TrEMBLA0A498KGD91e-174A0A498KGD9_MALDO; Uncharacterized protein
STRINGXP_008344202.11e-175(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-28AGAMOUS-like 62