PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000236656 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | B3 | ||||||||
Protein Properties | Length: 205aa MW: 22852.4 Da PI: 10.5088 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.2 | 1.8e-19 | 121 | 200 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k l++s+v + ++ lp f+++h + +++t+tledesgr++++k+i +k++ l++GW++F+ +++L egD++vF+l++ MDP0000236656 121 FVKSLVRSHVASCFWMGLPSLFCKSHLPD--KDITMTLEDESGRQYQLKYIACKTG----LSAGWRQFAASHNLLEGDVLVFQLVE 200 89************************644..678****************777776....***********************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.4E-19 | 113 | 204 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.65E-21 | 116 | 204 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.20E-26 | 119 | 205 | No hit | No description |
SMART | SM01019 | 3.3E-17 | 121 | 205 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-16 | 121 | 200 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.83 | 121 | 205 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MARKVDGKPQ TPPSKPRLRP KPAANPKPSS LPTAKVKKPG KPNEKEVEHS MPMKELSNTQ 60 ITKFPHKHIV ALIDQKVDGS SGNTQYEFPV DGSPSRGQAK SSAVIRAQEV RSKLERQFPS 120 FVKSLVRSHV ASCFWMGLPS LFCKSHLPDK DITMTLEDES GRQYQLKYIA CKTGLSAGWR 180 QFAASHNLLE GDVLVFQLVE LTKFK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.15352 | 7e-37 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008339962.2 | 1e-129 | B3 domain-containing protein Os01g0234100-like | ||||
Swissprot | Q5KQI4 | 8e-35 | Y5814_ORYSJ; B3 domain-containing protein Os05g0481400 | ||||
TrEMBL | A0A498KFP0 | 1e-114 | A0A498KFP0_MALDO; Uncharacterized protein | ||||
STRING | XP_008339962.1 | 1e-129 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1007 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 1e-34 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000236656 |
Publications ? help Back to Top | |||
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