PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000233653
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 805aa    MW: 88592.8 Da    PI: 7.2605
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000233653genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.61.4e-102783413598
                    EEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3  35 tltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     l+++d++g++W +++++  +++s++yvl+ G     ++ +L +gD+v+F++ +  e++lv+++++
  MDP0000233653 278 PLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLLAGDIVTFSRLE-PEGKLVMGFRK 341
                    589*************9989999999***9.********************766.77777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0062261343IPR003340B3 DNA binding domain
CDDcd100175.68E-8271341No hitNo description
SuperFamilySSF1019364.45E-8273342IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-14277348IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-8278341IPR003340B3 DNA binding domain
PROSITE profilePS5105013.844482532IPR011124Zinc finger, CW-type
PfamPF074964.1E-11487529IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MNAAGWRCCE SCGKRVHCGC IVSSHAFTLL DPGGIECMTC ARKNYVMTSN PAWPTSMFFH  60
SPLSERLKDL STKNWTQLAG SGPVPWRQAP SLFNSSIPSS ELHXRVPHEV DGSTGINKLN  120
ASERIFVSTL EKKKVEEFSE RLMKINLTIG TQQSLENGIG NPGNNIEEKS SSCLNISQQS  180
ASLKEEPSTP QFVPYGSASE TNXQLGVTGT NLWPIAPLAK NYNGNSHNGV ESSGDTQIRN  240
ARPRADARGR NQLLPRYWPR FTDQELQHIS GEYPLRLPLK VQDSKGKEWI FQFRFWPNNN  300
SRMYVLEGVT PCIQSMQLLA GDIVTFSRLE PEGKLVMGFR KASTSLQSDQ ENEANKTTNG  360
VSAHAESAES PSFLSMNQVE VADPSSWSNV DKSGYIAKEA LADKYYMPKK RKNSNLGSKS  420
KRLRIENEDL IELKVTWEEA QGLLRPPANH VPTVVVIEGF EFEEYEDAPL LGKPTIYATG  480
RAGERIQWAQ CEDCFKWRKL PXNALLPSKW TCSENSWDPE RSLCSAAQEL TTEQLQDLLP  540
RCNTVASKKM KAAKQDPDNI EVLEGLDTLA NLAILGEGES LPSSAQATTK HPRHRPGCSC  600
IVCIQPPSGK GPKHKQTCTC NVCLTVKRRF RTLMLRREKK QSDKEAETTR KKQHKGQLLV  660
VDKPEDDTLL YCNAGSSSPN QKIEILELSD DDLNLTKSST SPFKGQIDLN IQPEREDELS  720
PGSDSGGMMK LLHDATARYL RQQRLSSSGG GEKSSGNGSP RAASEAGGGE PLSNGVNLES  780
SNHDGGNDCP ATLSITASAS MTATG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C5e-312593451126B3 domain-containing transcription repressor VAL1
5yzz_C5e-312593451126B3 domain-containing transcription repressor VAL1
5z00_C5e-312593451126B3 domain-containing transcription repressor VAL1
5z00_G5e-312593451126B3 domain-containing transcription repressor VAL1
5z00_K5e-312593451126B3 domain-containing transcription repressor VAL1
5z00_M5e-312593451126B3 domain-containing transcription repressor VAL1
6j9a_A5e-312593452127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.138571e-109fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920704e-60KR492070.1 UNVERIFIED: Citrus sinensis clone 114-1c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028966232.10.0B3 domain-containing protein Os07g0563300
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A498IXS30.0A0A498IXS3_MALDO; Uncharacterized protein
STRINGXP_008383911.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-126HSI2-like 1