PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000231748
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 363aa    MW: 40865.8 Da    PI: 8.1234
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000231748genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.41.5e-1248104155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa+a++ a++k++g
  MDP0000231748  48 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAARAYDLAALKYWG 104
                    57*******************99998898888888********************98 PP
2AP251.42.8e-16147198155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV +++ +grW+A+I   +   g +k+ +lg+f t eeAa a++ a+ +++g
  MDP0000231748 147 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFATQEEAATAYDMAAIEYRG 198
                    89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-1648114IPR016177DNA-binding domain
PfamPF008471.7E-848104IPR001471AP2/ERF domain
SMARTSM003803.0E-2249118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-1349113IPR001471AP2/ERF domain
PROSITE profilePS5103219.36149112IPR001471AP2/ERF domain
PRINTSPR003674.2E-65061IPR001471AP2/ERF domain
PfamPF008478.8E-12147198IPR001471AP2/ERF domain
CDDcd000181.71E-24147208No hitNo description
SuperFamilySSF541717.85E-18147208IPR016177DNA-binding domain
SMARTSM003803.3E-25148212IPR001471AP2/ERF domain
PROSITE profilePS5103218.36148206IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-18148207IPR001471AP2/ERF domain
PRINTSPR003674.2E-6188208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAKTSQQNQK NTAGSTNRSS STTSTVTTTK VKRTRKSVRR DSPPQRSSIY RGVTRHRWTG  60
RYEAHLWDKN CWNESQNKKG RQGAYDDEEA AARAYDLAAL KYWGRDTILN FPVSTYEEEL  120
KXMESQSKEE YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTFA  180
TQEEAATAYD MAAIEYRGLN AVTNFDLSRY IKSLCPNNTN GPNGDQQNPD GDLHVMQNPD  240
GVLNQMHNPN CKPELEIMPD HTSSSSVSDS SVVLPRXGNG SSASSALGLL LQSPKFKEML  300
ERSSVKECSP TLSEPEIRRR IFPDDIQTYF DCQDLNSIAE GDDIIFGELQ PFASPVFHCE  360
LDA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354224.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-114AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A498HHH20.0A0A498HHH2_MALDO; Uncharacterized protein
STRINGXP_009354224.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-103ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]