PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000220168 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 218aa MW: 24770.4 Da PI: 9.9291 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.8 | 2.6e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien++nrqvt+sk rng++KKA+EL vLCdaev++i++ss+gk++ey+s MDP0000220168 10 RIENSTNRQVTYSKXRNGLFKKANELTVLCDAEVSLIMVSSSGKVHEYIS 59 8***********************************************86 PP | |||||||
2 | K-box | 79.8 | 6.7e-27 | 71 | 166 | 1 | 96 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 yqk+ g + +++++e +qq+l+kLk+ + nL+r++R+++G++L++Ls+ eL+ Le++ + ++ iR++K +++ ++i++++kk k++ + n++L++ MDP0000220168 71 YQKTLGIDIWSSHYEAMQQHLKKLKEVNMNLRRQIRQRVGDCLNDLSFDELRGLEEEXKAAVDVIRQRKVRMISNKIDTTKKKVKSQADVNMSLHE 166 78899999************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.02 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.87E-37 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 2.49E-35 | 3 | 96 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.2E-18 | 82 | 166 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.928 | 84 | 182 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MARGKIQIRR IENSTNRQVT YSKXRNGLFK KANELTVLCD AEVSLIMVSS SGKVHEYISP 60 STTTKQLLDQ YQKTLGIDIW SSHYEAMQQH LKKLKEVNMN LRRQIRQRVG DCLNDLSFDE 120 LRGLEEEXKA AVDVIRQRKV RMISNKIDTT KKKVKSQADV NMSLHELRMK GIMIQCVAAH 180 QMEEDLPYLR SSNQSHPTNL XCXAAGAASD STTTAVIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 9e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_B | 9e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_C | 9e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_D | 9e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_A | 8e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_B | 8e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_C | 8e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_D | 8e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.27167 | 0.0 | cell culture |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB265799 | 0.0 | AB265799.1 Pyrus x bretschneideri PbMADS1 mRNA for transcription factor MADS, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028962429.1 | 1e-118 | floral homeotic protein DEFICIENS | ||||
Swissprot | E0CPH4 | 2e-77 | AP3_VITVI; Agamous-like MADS-box protein AP3 | ||||
TrEMBL | D9ZJ43 | 1e-116 | D9ZJ43_MALDO; MADS domain class transcription factor | ||||
STRING | XP_008221326.1 | 2e-94 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2735 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 2e-71 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000220168 |
Publications ? help Back to Top | |||
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