PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000198404
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 613aa    MW: 67344.1 Da    PI: 7.4462
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000198404genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.32e-16405451455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  MDP0000198404 405 VHNLSERRRRDRINEKMRALQELIPHS-----NKTDKASMLDEAIEYLKSLQ 451
                    6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.03E-20399461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.152401450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.54E-17404455No hitNo description
Gene3DG3DSA:4.10.280.101.2E-19405456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-13405451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-16407456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MDTKSNACID KLQVSCCPPS SPHNLTHTKR GGERKRSAFH NSSLELILNF CLLRDMNSCI  60
PEGNFEADLP LTNQKKSMGP DHELVELLWR NGQVVLNSQT HRKPSLNPND QPRQVQKHDQ  120
QSIRSGGLYG NSGSLIQDDD TVSLIHYPLE DSFDKEFCSH FFSELHSCGP IELDKPIKQF  180
EGDKFDASDT GRLVSNSPQP NVKSSAGVEY PANPMPPPRY HYINSTDQPN QNRGLGKIVN  240
FAQFATPGKL SAGSSRGQLG GKEAGDLAQA EVRECSVMTV GSSYAGSNQV LNELDVSRAS  300
SNCDGTTGLS AGHFYDNVHK IMPQSETGKT DTLDQTLTSS SGGSGSSFGR GGKQSNVVNS  360
NKRKVRDAED SECQSEAAEL ESASAAGSKS AHRSGSTRRS RAAEVHNLSE RRRRDRINEK  420
MRALQELIPH SNKTDKASML DEAIEYLKSL QMQLQVIWMG SGMAXMMFPG VQHYISQMGM  480
GPPALPAMHN PVRLPRHPLV DQCMNVAPAP NQTVMCQPPV LNPVDYHNQV QNPSFQEQYA  540
RLMNFHHMQT MSQPMNMFRF GSRPVQQNNQ MMAANGVSSG PFGVGAATND PLSGRMIQRL  600
ISVQECKNLT PDN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1409414ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.268541e-118bud| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894150.0KP689415.1 Prunus pseudocerasus isolate Unigene5738 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008342323.20.0transcription factor PIF4-like
RefseqXP_008342324.20.0transcription factor PIF4-like
TrEMBLA0A498H8P90.0A0A498H8P9_MALDO; Uncharacterized protein
STRINGXP_008342323.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.33e-39phytochrome interacting factor 3-like 5