PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000193947
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 475aa    MW: 53890.4 Da    PI: 5.6473
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000193947genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.87e-2496195186
       trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 
                    +Wt+ +v++Li a+ +++++ ++g              +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++  ++
  MDP0000193947  96 KWTDTMVRLLIMAVFYIGDEASDGPdptgkkkpaggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQGLL 191
                    7*********************9866677788999999**********************************************559999999999 PP

       trihelix  83 dqle 86 
                    ++++
  MDP0000193947 192 EKMD 195
                    9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2194220No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MEANGLFSGM LGLEMPLHQN PQNPPNPQNP HNPMHQPQMV PYAPHHDPDP HQNPHQSVKQ  60
GYPFAPKSKQ IALSDDDEPG FGADDKRKIS PWQRMKWTDT MVRLLIMAVF YIGDEASDGP  120
DPTGKKKPAG GLLQKKGKWK SVSRAMMEKG FYVSPQQCED KFNDLNKRYK RVNDILGKGT  180
ACRVVENQGL LEKMDLAPKM KEEVRKLLNS KHLFFREMCA YHNSCGHGTV GGASNGAHNS  240
PPEAATEPSE IPAQQQQXCF HSSENAQAVA NSGRSETEGS KMVVGXSGGE DEDEDEEEDE  300
SEDEDDEEED EVVGGGCRGQ IGHGNHEDED DNNDERAPRK MARKEGCSAG SSSSSQLMQQ  360
LSCEMRVVMQ DVTKTPWEKQ QWLKTRLIQL EEQQVSYQYQ AFELEKQRLK WIKYSGKKER  420
DMERAKLENE RRRLENERML LLVRRKELEL HQQQQQQQQQ NSSNKRSDPP SSLTG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.18290.0bud| fruit| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017186618.20.0uncharacterized protein LOC103431060
TrEMBLA0A498I4C10.0A0A498I4C1_MALDO; Uncharacterized protein
STRINGXP_008367432.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.13e-77sequence-specific DNA binding transcription factors