PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000192342
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 183aa    MW: 21360 Da    PI: 7.4182
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000192342genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.41e-091159350
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEE.EEEE-TTSEEEEEE CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaeva.viifsstgklyeys 50
                   i+ ++ r  t+ kR++  + K +E+ +LC++ ++ vi+  s+ k+  ++
  MDP0000192342 11 ISHERSRRATLKKRKASFFRKLNEITTLCGVIACaVIYDTSDTKVDVWP 59
                   889999************************9877255557777887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.521151IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-5160IPR002100Transcription factor, MADS-box
CDDcd002664.19E-17285No hitNo description
SuperFamilySSF554551.31E-15394IPR002100Transcription factor, MADS-box
PfamPF003199.3E-111154IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MAKNRTKHEL ISHERSRRAT LKKRKASFFR KLNEITTLCG VIACAVIYDT SDTKVDVWPS  60
PQEAFYVLEK IKNLPEERQG KFKLDQESFL KNNISKQNRQ LERVRFKNQE LDEKLLXIEY  120
XELEXKNFLD PGRLESLIGL DDQLDKRIXF LTXRIEFFEG VGRNQVDAGV DSNEMGVVDD  180
NQG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017182559.21e-103agamous-like MADS-box protein AGL80
TrEMBLM5XZI53e-78M5XZI5_PRUPE; MADS-box protein 29
STRINGXP_008352802.11e-105(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144641115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.21e-21AGAMOUS-like 87