PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000190269
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 493aa    MW: 56195.1 Da    PI: 10.4684
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000190269genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.51.9e-17309394188
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                    +fY +Y ++vGF +r+++ +k+ ++g++++r fvCs +g+r ++k++  + ++++++tr gC+ +l+++    gk+ + +++ eH+H 
  MDP0000190269 309 NFYMTYVYHVGFGIRRNNAHKR-EDGTFKDRLFVCSAQGYRGPDKHD-ANVQHHHTKTRFGCQSRLQINSPIPGKYLMVDFVAEHTHG 394
                    6***************998876.9999*****************999.88999999*******************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-13309394IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MGSHQLRWSS FVPRTITCTS TRRNRCQSCT RTRAARSTWC RRGSRVRCRA RLSGRSGRKP  60
LNSCTITRMP PWRTGSGRSS RVTIRCPRYR TSSCTSRSLI DFDRVLRTTV NIYETAHRTA  120
TGDRKSVCVS LGPTTLSHAS PDFLHPNTLW SFRGPSKYAT RVHPLTNLNS VIFSVILKLL  180
LSTKFLEKEI AKGIRRLDST KYPSIARLSF FLAVASKVLR FHVQALNHGA KKIICIKIWT  240
SLEYQTEAHR KLDFEGDISM NNFVEGECSD KKLEDTTDGE NIVLIHSKIQ KEFIPTVGLE  300
FETEVQAYNF YMTYVYHVGF GIRRNNAHKR EDGTFKDRLF VCSAQGYRGP DKHDANVQHH  360
HTKTRFGCQS RLQINSPIPG KYLMVDFVAE HTHGTTSPSK THFFRAHKNI SVARKTLADM  420
ADSSGIDPKA TIEFFSRQAG GRENLGFIPE DYRNYLCSKR TTEMKIGDTS GVLEYLQKNT  480
IERSQYFLCN TSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-26FAR1-related sequence 5