PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000190269 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 493aa MW: 56195.1 Da PI: 10.4684 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 55.5 | 1.9e-17 | 309 | 394 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY +Y ++vGF +r+++ +k+ ++g++++r fvCs +g+r ++k++ + ++++++tr gC+ +l+++ gk+ + +++ eH+H MDP0000190269 309 NFYMTYVYHVGFGIRRNNAHKR-EDGTFKDRLFVCSAQGYRGPDKHD-ANVQHHHTKTRFGCQSRLQINSPIPGKYLMVDFVAEHTHG 394 6***************998876.9999*****************999.88999999*******************************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-13 | 309 | 394 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 493 aa Download sequence Send to blast |
MGSHQLRWSS FVPRTITCTS TRRNRCQSCT RTRAARSTWC RRGSRVRCRA RLSGRSGRKP 60 LNSCTITRMP PWRTGSGRSS RVTIRCPRYR TSSCTSRSLI DFDRVLRTTV NIYETAHRTA 120 TGDRKSVCVS LGPTTLSHAS PDFLHPNTLW SFRGPSKYAT RVHPLTNLNS VIFSVILKLL 180 LSTKFLEKEI AKGIRRLDST KYPSIARLSF FLAVASKVLR FHVQALNHGA KKIICIKIWT 240 SLEYQTEAHR KLDFEGDISM NNFVEGECSD KKLEDTTDGE NIVLIHSKIQ KEFIPTVGLE 300 FETEVQAYNF YMTYVYHVGF GIRRNNAHKR EDGTFKDRLF VCSAQGYRGP DKHDANVQHH 360 HTKTRFGCQS RLQINSPIPG KYLMVDFVAE HTHGTTSPSK THFFRAHKNI SVARKTLADM 420 ADSSGIDPKA TIEFFSRQAG GRENLGFIPE DYRNYLCSKR TTEMKIGDTS GVLEYLQKNT 480 IERSQYFLCN TSG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3045 | 14 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-26 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000190269 |