PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000184069
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 490aa    MW: 54259.9 Da    PI: 6.1605
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000184069genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.34.3e-55261651128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrFhPtdee+++ yL kkv ++++e+  +i e+d++k+ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkdke+++k 
  MDP0000184069  26 LPPGFRFHPTDEEIITSYLIKKVINSRFEA-AAIGEADLNKSEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFNKi 120
                    79**************************99.88***************99999*****************************************97 PP

            NAM  96 ..kgel............vglkktLvfykgrapkgektdWvmheyrl 128
                      +  +            vg+kktLvfy+grapkgekt+Wvmheyrl
  MDP0000184069 121 kkQ--QqqggkgagggclVGMKKTLVFYRGRAPKGEKTNWVMHEYRL 165
                    641..2467788888888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-6116192IPR003441NAC domain
PROSITE profilePS5100558.4526191IPR003441NAC domain
PfamPF023656.1E-2927165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MDPSMEAQTE TGMVVNSGTS NELKGLPPGF RFHPTDEEII TSYLIKKVIN SRFEAAAIGE  60
ADLNKSEPWD LPKKAKMGEK EWYFFCQRDR KYPTGMRTNR ATESGYWKAT GKDKEIFNKI  120
KKQQQQGGKG AGGGCLVGMK KTLVFYRGRA PKGEKTNWVM HEYRLDGKIP PYNDLSKAAK  180
DEWVVCRVFH KNMGLKKTLS PTRMNSFGNI GDHDLLDCSS LPPLMDPTLD TSNIMTNKHS  240
SGYGDNDFKP DPIITVTPLS DHHGISTNSY LNYLSLGGGG SVQALKQSYN FQLHPTSNDN  300
SHQASSLSNP SNKLYPPPXY HYHQHHQFQN PSSFSNFQPN QMMSNSDYFQ QGMMRGAQGQ  360
GSVFRTSTST SSDHDDDDQA IPRATAKDNN KNKMENNIET SSSGLGGGGL DRQCKVEQFS  420
TNQSMFSLSQ DTGLSTDMNT NEISSSFVSK QELGNEAVED EVAEIEAAVV QAVEGAVVVE  480
EPETNQTANE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-522619717171NO APICAL MERISTEM PROTEIN
1ut4_B5e-522619717171NO APICAL MERISTEM PROTEIN
1ut7_A5e-522619717171NO APICAL MERISTEM PROTEIN
1ut7_B5e-522619717171NO APICAL MERISTEM PROTEIN
3swm_A7e-522619720174NAC domain-containing protein 19
3swm_B7e-522619720174NAC domain-containing protein 19
3swm_C7e-522619720174NAC domain-containing protein 19
3swm_D7e-522619720174NAC domain-containing protein 19
3swp_A7e-522619720174NAC domain-containing protein 19
3swp_B7e-522619720174NAC domain-containing protein 19
3swp_C7e-522619720174NAC domain-containing protein 19
3swp_D7e-522619720174NAC domain-containing protein 19
4dul_A5e-522619717171NAC domain-containing protein 19
4dul_B5e-522619717171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126133GGKGAGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.80190.0fruit| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981250.0KF198125.1 Malus hupehensis NAC domain protein (NAC112) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008386798.20.0NAC domain-containing protein 87-like
SwissprotQ9FK441e-105NAC87_ARATH; NAC domain-containing protein 87
TrEMBLS5RDS40.0S5RDS4_MALHU; NAC domain protein
STRINGXP_008386798.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.15e-97Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]