PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000179225 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 1020aa MW: 111833 Da PI: 5.0435 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.5 | 1.5e-18 | 37 | 83 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l MDP0000179225 37 KGQWTPEEDEILRRAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 62.8 | 6.7e-20 | 89 | 135 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+ ++++vk++G++ W+tIa++++ gR +kqc++rw+++l MDP0000179225 89 KGPWSKEEDDVIIELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 48.8 | 1.6e-15 | 141 | 183 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++++G++ W+ + ++ gRt++ +k++w+ MDP0000179225 141 KEAWTQEEELALIRAHQMYGNK-WAELTKFLP-GRTDNAIKNHWN 183 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.177 | 32 | 83 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.09E-19 | 35 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-15 | 36 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-16 | 37 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 38 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.06E-14 | 40 | 83 | No hit | No description |
PROSITE profile | PS51294 | 33.7 | 84 | 139 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.12E-31 | 86 | 182 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.1E-19 | 88 | 137 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-18 | 89 | 135 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.29E-16 | 91 | 135 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-27 | 96 | 143 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-15 | 140 | 188 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.738 | 140 | 190 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.2E-14 | 141 | 184 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.54E-11 | 143 | 183 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 144 | 190 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1020 aa Download sequence Send to blast |
MEGERTNSTP SEVLGDNNQK ARALHGRTSG PTRRSTKGQW TPEEDEILRR AVQRFKGKNW 60 KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDDVI IELVKKYGPK KWSTIAQHLP 120 GRIGKQCRER WHNHLNPGIN KEAWTQEEEL ALIRAHQMYG NKWAELTKFL PGRTDNAIKN 180 HWNSSVKKKL DSYLKSGLLT QFQGMPHVGN QSQHMMSSSS RMQSSGDDSG AKGAEAEEIS 240 ECSQDSTVAG RSAQMANVVP HPIEEFQNNE VSHLANDPSF SPVSCSEPYY PSIGXANVSI 300 PEIPPELVCS KYLEQNFSHD AGASMSGDFQ LNLHELPNIS SLECGQESLR MHGGVEAPFQ 360 TSTSMGNMAV GSVKSEHMLI SDDECCRVLF SMNDGCFPSR XFTDDSNMVD LGACTDSVLL 420 QPSNLQISDP GRTSASQLYH PLNSGVIGTS CSQVVSAHET PLIYAGEPTH LFIVQDQEFV 480 TSSNDGFIYT NESASSPCKS DLVSDSSKLV PVNTFALGLD AQTCPVDVSS NEQTEQQDAG 540 SLCYEPPRFP SLDIPFFSCD LIQSGNDMQQ EYSPLGIRQL MMSSMNCLTP YRLWDSPSXE 600 GSPDALLKSA AKTFTGTPSI LKKRHRDLLS PLSPLSDRRF DKRVGTDVTS CLARDFSRLD 660 VMFEDTENKE DSLSPSSDQK RNSDASVEDK ENKGTCENKV EKGIDSTAMS DDGTAQKDVD 720 DGQSQEKRKQ FQQTSDVDAE SKVDLVPTTQ SAQPSGVLVE RNTNDLLLNS PDVVGCKAEK 780 PFGSTARTPK XLLRKSFEAT NPGVPSKSFS ARQCSSVKTP TICIKKHESL ADKCLQSGSS 840 SVPPETSGDN AGNDVSIESM FGGTPFKRSI ESPSAWKSPW FINSFVPGPS VDTEITIEDI 900 GFFMSPGDRS YDAIGLMKQI SEQSAAAYAN AQEVLGNETP ESLFQERQKD RDXAGLENKQ 960 GLPNQPGSAS LSGSDVXVER RTLDFSECGT PGKKGTENVK SASNAKSFSS PTSYLLKGCR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 6e-70 | 37 | 190 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-70 | 37 | 190 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.8553 | 0.0 | fruit |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008378105.2 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
TrEMBL | A0A498JAH1 | 0.0 | A0A498JAH1_MALDO; Uncharacterized protein | ||||
STRING | XP_008378105.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3727 | 33 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | Homeodomain-like protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000179225 |