PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000178636

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 538aa MW: 59998 Da PI: 6.8501

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000178636	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.6	0.00026	434	466	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++++ + +K + a++L +A++YIk Lq MDP0000178636 434 DRITALQQIVSPF-----GKTDTASVLYEAIQYIKFLQ 466 6788888888887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.807	416	465	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-8	431	472	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.32E-9	431	474	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.81E-4	434	470	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MAEECGVAIS SSSTQLTQQN WWDLVSSTNP WQQQQQQQQL NQKYSNSSNN NCDDVDQDVS 60 ISSTSFTNAS NHSSLSVDSS RRLLADQRSA SSNDDLINGE QVSDNHIWNH VLLSVNANHD 120 LRNNDHGVGE NFIDALPSKG LSTHHVMYDE PACDYLKKLD NNSTWEFTNS AASNFNNFEK 180 QINGGFMDNN MNISIENERL TKLSNLVSSW SIAPPEPQLV LNNFPPHQVM DHDHHYSQPN 240 LCHLKPQPFF NDSTSSCNPQ MGITNRNSAS SLFSCYRSQN MKVDDQNHGH PNGIEYQIGL 300 DNPMAADHHN SKYFNGNGSI LPDSYSSCTS TNAARNFADV ISFTSRLGNK PLNDLHAPKP 360 CFKSFNSSDH SKKQNLQTSS SARMSGGRGQ GIANEGKKKR TDDTSSETVV KKPKQETSTV 420 SSAKMQAPKV KLGDRITALQ QIVSPFGKTD TASVLYEAIQ YIKFLQEQVH VLLNSPYLKT 480 NSPKDPWAME RKDHKGDTKV DLKSKGLCLV PVSCTPQVYR ENTGSDYWTP TYRGSLYR

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MAEECGVAIS SSSTQLTQQN WWDLVSSTNP WQQQQQQQQL NQKYSNSSNN NCDDVDQDVS  60
ISSTSFTNAS NHSSLSVDSS RRLLADQRSA SSNDDLINGE QVSDNHIWNH VLLSVNANHD  120
LRNNDHGVGE NFIDALPSKG LSTHHVMYDE PACDYLKKLD NNSTWEFTNS AASNFNNFEK  180
QINGGFMDNN MNISIENERL TKLSNLVSSW SIAPPEPQLV LNNFPPHQVM DHDHHYSQPN  240
LCHLKPQPFF NDSTSSCNPQ MGITNRNSAS SLFSCYRSQN MKVDDQNHGH PNGIEYQIGL  300
DNPMAADHHN SKYFNGNGSI LPDSYSSCTS TNAARNFADV ISFTSRLGNK PLNDLHAPKP  360
CFKSFNSSDH SKKQNLQTSS SARMSGGRGQ GIANEGKKKR TDDTSSETVV KKPKQETSTV  420
SSAKMQAPKV KLGDRITALQ QIVSPFGKTD TASVLYEAIQ YIKFLQEQVH VLLNSPYLKT  480
NSPKDPWAME RKDHKGDTKV DLKSKGLCLV PVSCTPQVYR ENTGSDYWTP TYRGSLYR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008389123.1	0.0	transcription factor bHLH110-like
TrEMBL	A0A498I780	0.0	A0A498I780_MALDO; Uncharacterized protein
STRING	XP_008389123.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10116	26	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	5e-56	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000178636