PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000168614 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | Whirly | ||||||||
Protein Properties | Length: 402aa MW: 44322 Da PI: 10.0635 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 206.4 | 3.2e-64 | 59 | 194 | 2 | 137 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkve 97 ++k+kaal++ +v+ptf++l+sg+l+++r+G+++l++++a++erkydWek+q falsatev+ l++l+s++sce+fhdp++k+sn+G+vrk+l+++ MDP0000168614 59 IFKGKAALSLTPVLPTFTKLESGSLVVDRRGSVMLKFTPAIGERKYDWEKRQMFALSATEVGALISLGSNDSCELFHDPSMKSSNAGQVRKSLSIK 154 9*********************************************************************************************** PP Whirly 98 PlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 P++dGsG+fv+l+v n+l+k+ esfsvPv+ aefav++++ MDP0000168614 155 PHADGSGYFVSLTVVNNLLKTRESFSVPVTTAEFAVMKTA 194 **************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 1.4E-74 | 46 | 212 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 4.71E-64 | 51 | 216 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 3.9E-60 | 59 | 193 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MLKVLRVLSS STTKFRSHFC TRDASSMYAY THITRFSTAT QKFSVKGPSS HQVYASFDIF 60 KGKAALSLTP VLPTFTKLES GSLVVDRRGS VMLKFTPAIG ERKYDWEKRQ MFALSATEVG 120 ALISLGSNDS CELFHDPSMK SSNAGQVRKS LSIKPHADGS GYFVSLTVVN NLLKTRESFS 180 VPVTTAEFAV MKTACSFALP HIMGWDRLTN KMPAGGGGGG GGQESKAVPQ LLEDSSATNC 240 CYISNNRKQE GEFNDFSLSD PSDKPPIPIP IPIPIPPDQQ PTVDAIALVI HPNFANARLR 300 RWKISDTSSG CTRNLFKELV IKKGSSVANR RCSYSLPMNK FFFIALHWSD KRLFTEGRAV 360 EDCLTTKLKA IGQTKLHISM MDWGVMSYVT FNILANVSIR TQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 6e-84 | 50 | 212 | 8 | 170 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 6e-84 | 50 | 212 | 8 | 170 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 6e-84 | 50 | 212 | 8 | 170 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 6e-84 | 50 | 212 | 8 | 170 | Single-stranded DNA-binding protein WHY2, mitochondrial |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.3433 | 0.0 | bud| fruit| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315715.1 | 1e-169 | single-stranded DNA-bindig protein WHY2, mitochondrial-like | ||||
Swissprot | D9J034 | 1e-85 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A498K2I0 | 1e-168 | A0A498K2I0_MALDO; Uncharacterized protein | ||||
STRING | XP_008348715.1 | 1e-169 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11383 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 1e-87 | WHIRLY 2 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000168614 |