PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000162533
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 349aa    MW: 38188.1 Da    PI: 10.3051
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000162533genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-14100144347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + k+lG+g+W+ Iar + ++Rt+ q+ s+ qky
    MDP0000162533 100 PWTEEEHRVFLAGLKKLGKGDWRGIARNFVTTRTPTQVASHAQKY 144
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.43593149IPR017930Myb domain
SuperFamilySSF466893.8E-1794148IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-1896148IPR006447Myb domain, plants
SMARTSM007171.5E-1197147IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-1297143IPR009057Homeodomain-like
PfamPF002492.3E-11100144IPR001005SANT/Myb domain
CDDcd001676.11E-10100145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDKESARKCS HGGHNGHNSR TCNHGHGNKG VCLKLFGVKI MEKEEDSIKK SYSMGNLQAD  60
STGDHNNNAA AADHDAGYLS DGLIHNKRHK ATHERKKGRP WTEEEHRVFL AGLKKLGKGD  120
WRGIARNFVT TRTPTQVASH AQKYFLRQAT NDKRKRRSSL FDMHFKELSD QGPQDSSISP  180
TKSADETSPQ ASSSKTMPLK INTANNSPPA SNVPTQILNR FPHLCLDSPP APPFSPTCTL  240
PNYPAMPFMM RIPANVPYAP MTHFYRSSYY HMIKNHGNFP TCAPVISHPS GIPSLPRSLP  300
SSPSMAAGRI SSMTSAAEKD ALELKIGQPQ RSQGASLSPP SSSGAIRVT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008376361.10.0probable transcription factor At5g61620
TrEMBLA0A498KKE50.0A0A498KKE5_MALDO; Uncharacterized protein
STRINGXP_008376361.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138741921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.13e-62MYB_related family protein