PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000160256
Common NameBHLH8
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 326aa    MW: 36930.3 Da    PI: 8.1183
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000160256genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.3e-13115182155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC................TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkas.............kapskKlsKaeiLekAveYIksLq 55 
                    +r++h  +Er+RR+++N+ ++ Lr+l+P+++             ++++ + + a+i+  A++++k+L+
  MDP0000160256 115 QRMTHIVVERNRRKQMNEYLAVLRSLMPQSYaprsyyrrevhehRTSNVRGDQASIVGGAINFVKELE 182
                    79***************************777*********************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-13113200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.36E-11113184No hitNo description
PROSITE profilePS5088814.443114181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12114184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-10115182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-7120187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MTLEAVVYPQ EYPFSFGCKD FYSFNGGGSW GSDFISQDQQ GNNEYWDYCS SSPSLLQNVK  60
DWDPNSSPEA CTVDQSCPSG QHLSAMEAPP QLATTSRRKR RRTKSSKNKE EIENQRMTHI  120
VVERNRRKQM NEYLAVLRSL MPQSYAPRSY YRREVHEHRT SNVRGDQASI VGGAINFVKE  180
LEQLFQSMNS NKRSKQQPLA DFFTFPQFST RATQNNNSAG VQANESNTTQ CNNNQWAAAD  240
IEVTMVDNHA NLKILSKKRP RQLLKMVAGF QSLRLSVLHL NVTTADEMVL YSVSVKIEEG  300
CPLNTVDEIA AAVNQMLRTI QEAAFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197101RKRRR
297102RKRRRT
3115126RMTHIVVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.48790.0fruit| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894291e-161KP689429.1 Prunus pseudocerasus isolate Unigene16433 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028950837.10.0transcription factor bHLH96-like
SwissprotQ9C7T42e-83BH096_ARATH; Transcription factor bHLH96
TrEMBLD9ZIP60.0D9ZIP6_MALDO; BHLH domain class transcription factor
STRINGXP_009373431.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-83bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]