PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000158937
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 316aa    MW: 35738.9 Da    PI: 6.9166
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000158937genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.6e-185497146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg++T+eE++ ++d+++ lG++ W+ Ia++++ gRt++++k++w++
    MDP0000158937 54 RGSFTPEEEQTIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 97
                     89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.364848IPR017930Myb domain
SuperFamilySSF466892.21E-231095IPR009057Homeodomain-like
SMARTSM007175.2E-51250IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-141455IPR009057Homeodomain-like
PROSITE profilePS5129426.58549103IPR017930Myb domain
SMARTSM007178.2E-1653101IPR001005SANT/Myb domain
PfamPF002491.9E-165497IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2656103IPR009057Homeodomain-like
CDDcd001672.06E-115696No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGHRCCGKQK VKRGLWSPEE DEKLRKHITT HGLQRCGKSC RLRWINYLRP ELRRGSFTPE  60
EEQTIIDVHR ILGNKWAQIA KHLPGRTDNE VKNFWNSCIK KKLMSQGLDP KTHNLLPKSH  120
HQRSASNNAA SSSQSPLLQS HNQQQPISVH LTEINASPIN VTLSTDQYHD HGQNPSNASW  180
TRVDDPTFND ITRLPHQQST DHSTLINNIS SSSPSSSVNL SVFGLLENSN IWASGTEPFE  240
APRILVGEQS KGEEVVLQQE KDTLLDQMEI KGIEDMDHAS IFESSSVDFS FVESTLMSCG  300
EISQDLNSMC NFAWRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26131037108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008346072.10.0transcription factor MYB8-like isoform X1
TrEMBLA0A498JZL50.0A0A498JZL5_MALDO; Uncharacterized protein
STRINGXP_008346072.10.0(Malus domestica)
STRINGXP_008371964.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.19e-74myb domain protein 67