PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000156730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | FAR1 | ||||||||
Protein Properties | Length: 225aa MW: 25994.4 Da PI: 10.1267 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 97.2 | 1.9e-30 | 122 | 209 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+ YA++vGF +r+++ ++s r+g++++r++vC+keg+r+++ k+ +++r++ra tr gCka+l+vkk+k+gkw vt++ +eHnH+l+ MDP0000156730 122 FYDGYATQVGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKTRAKR-TENRKPRAITREGCKAMLVVKKDKSGKWIVTRFIKEHNHPLV 209 9*******************************************99.9***************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-28 | 122 | 209 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MHFFAAVDHS SANTLEFELK RFNRPPPPQN QKNQKGTNFL LPLYCRSQAN CWVAISLSQQ 60 NLRWNLITML IWAVDDEEPS XSKDEDVLES SNRKEAVTYE GNSDTEPFVG MEFESEEAAK 120 VFYDGYATQV GFIMRVDAFR RSMRDGKVVW RRLVCNKEGF RKTRAKRTEN RKPRAITREG 180 CKAMLVVKKD KSGKWIVTRF IKEHNHPLVG TPANGRRSML LSQTP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009358951.1 | 1e-111 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A498JVF8 | 1e-112 | A0A498JVF8_MALDO; Uncharacterized protein | ||||
STRING | XP_009358951.1 | 1e-110 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 3e-62 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000156730 |