PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000156241

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Dof

Protein Properties

Length: 378aa MW: 41073.9 Da PI: 7.8007

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000156241	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.6e-39	69	129	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ MDP0000156241 69 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 129 57899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.1E-33	71	127	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	73	127	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-26	74	127	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	75	111	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MLSNCDHEKM ALLISSTTNE WPQMQQDIQI DDIDHQRGLN NNNNAMSSST SSSANRIMEK 60 PGQEQLQLQQ QALKCPRCDS SNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG 120 GCRKNKRVKR PGSTSSTSSA MDGGTPSSSS SVPSTTAAVN NNNSNPNSHP SHIDQINPLF 180 YGLSSNPFMD TASGFDLHQL NHQAQLGLGF SSSSGTNMMS SDNYRNRFNP ASNSSLPSNY 240 SSMFSTSPST TAPTVASVLA SKFINGGAFK DIQTRGPHQH NQYFQSLLPF EDLQIAAGSN 300 GEAGSASKDV KVEDHGGQNR LEWNNNNGSS NVNGNMNCQN QITEQMGLSD PTLYWNSSTL 360 GSNWHDPANL GSSVSSLI

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MLSNCDHEKM ALLISSTTNE WPQMQQDIQI DDIDHQRGLN NNNNAMSSST SSSANRIMEK  60
PGQEQLQLQQ QALKCPRCDS SNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG  120
GCRKNKRVKR PGSTSSTSSA MDGGTPSSSS SVPSTTAAVN NNNSNPNSHP SHIDQINPLF  180
YGLSSNPFMD TASGFDLHQL NHQAQLGLGF SSSSGTNMMS SDNYRNRFNP ASNSSLPSNY  240
SSMFSTSPST TAPTVASVLA SKFINGGAFK DIQTRGPHQH NQYFQSLLPF EDLQIAAGSN  300
GEAGSASKDV KVEDHGGQNR LEWNNNNGSS NVNGNMNCQN QITEQMGLSD PTLYWNSSTL  360
GSNWHDPANL GSSVSSLI

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.10549	0.0	bud\| leaf\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009352890.1	0.0	PREDICTED: dof zinc finger protein DOF1.4
TrEMBL	A0A498IVP3	0.0	A0A498IVP3_MALDO; Uncharacterized protein
STRING	XP_008383710.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	3e-35	Dof family protein

Link Out ? help Back to Top
Phytozome	MDP0000156241