PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000153773 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB_related | ||||||||
Protein Properties | Length: 295aa MW: 32673.4 Da PI: 6.2728 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.4 | 2.1e-15 | 26 | 68 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l+++++ lG++ W+ Ia++++ gRt++++k++w+ MDP0000153773 26 RGSFSPQEAALIIELHSILGNK-WAQIAKHLP-GRTDNEVKNFWN 68 899*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.449 | 1 | 20 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-5 | 6 | 19 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.92E-20 | 7 | 75 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-25 | 20 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.159 | 21 | 75 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-15 | 25 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-14 | 26 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.12E-11 | 28 | 68 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MRPGLQRCGK SCRLRWTNYL RPDLKRGSFS PQEAALIIEL HSILGNKWAQ IAKHLPGRTD 60 NEVKNFWNSS IKKKLIPHEV NPAFASFSSD HIHNSRSHGS EEGFFTLNTN PNLGSQPQDQ 120 LYLPIVPSPT PSLGLDYHGD FNNILKLDQT SYASNFVDHF LPPFQLPSNN SSSCESSSWS 180 LGYQPHCQYD PNVQQVQNFS INEAAAAQYN NIGNELMVPI SMASSAPAAY EIIDSNACGM 240 PILYPSDTQE LDSLTKLSCF TSDHGSHPQD LQFPSNQLEC IKAIMSSLPS SSSSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 7 | 75 | 40 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM476581 | 1e-42 | AM476581.2 Vitis vinifera contig VV78X241396.15, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028963359.1 | 0.0 | transcription factor MYB26-like | ||||
TrEMBL | A0A498IZS9 | 0.0 | A0A498IZS9_MALDO; Uncharacterized protein | ||||
STRING | XP_008391467.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3014 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 1e-45 | myb domain protein 26 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000153773 |