PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000153244
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SBP
Protein Properties Length: 1186aa    MW: 131971 Da    PI: 5.1245
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000153244genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP98.94.2e-31496561166
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTT CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrL 66 
                    +C+++gC+adls+ak y+rrh+vCe hskap v+vsgl++rfC  Csrfh+lsefD++k+sCrr+L
  MDP0000153244 496 ICKADGCAADLSDAKAYNRRHRVCELHSKAPLVIVSGLKRRFCHNCSRFHDLSEFDDTKQSCRRHL 561
                    5***************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056591.2E-164147IPR008808Powdery mildew resistance protein, RPW8 domain
PROSITE profilePS5115314.136193343IPR008808Powdery mildew resistance protein, RPW8 domain
PfamPF056596.9E-28199328IPR008808Powdery mildew resistance protein, RPW8 domain
Gene3DG3DSA:4.10.1100.102.2E-29491558IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.794494571IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-29495563IPR004333Transcription factor, SBP-box
PfamPF031104.3E-24497561IPR004333Transcription factor, SBP-box
SuperFamilySSF525407.42E-24673842IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd000094.85E-5682829No hitNo description
PfamPF009316.0E-11692818IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3001.3E-8697820IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF004032.6E-5953997IPR006121Heavy metal-associated domain, HMA
Gene3DG3DSA:3.30.70.1003.2E-59541000No hitNo description
SuperFamilySSF531372.35E-1011011162No hitNo description
Gene3DG3DSA:3.30.420.602.9E-1911021164No hitNo description
PfamPF034643.8E-1111031163IPR005141eRF1 domain 2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030001Biological Processmetal ion transport
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1186 aa     Download sequence    Send to blast
MALSLVGGAA IGALFGALYD VVKISIGKTA MQYKPLLREL KFTLDSLRPR IIQQIGEHNV  60
ELGISNEDIV SLQRQMEEGT ELVRMLSNRG TWSCYILCSC CNCNKPSYAE QLVELDRSLR  120
ILLEILKLQE ARDVKEVLVL ARKINDKQDE LERRLADLLK VQQESGDGGE SSGSGAETTP  180
NEQNGENGGQ QVAPSGGGVG AAALGAAFGV LFDTVMQVKD KTTMLKRPLG DLKSTLDSVK  240
PLIEEVAECS KVLNLPNEEL EDVXIQMEKG AELVSNCSKI RXWTTYKMYE YTNKLLGLDE  300
SLQRLLTVLR LQLARDVRET LVSVSNIEAV INQIEGSGVV KLQNEQNEAK GXCEAPAAMG  360
KSAVGLNALS VEGTRDVTET LDPEANIKVG WQKVEESWVA XSKTEHPSRT VGLDAMNMQV  420
GARSMEETSI SDVEPGLKRI QRKEVSKLDA PFRVLGKDVL KDEEDEELDE KVEDHHDRKK  480
KGDESVTGAS GDGMAICKAD GCAADLSDAK AYNRRHRVCE LHSKAPLVIV SGLKRRFCHN  540
CSRFHDLSEF DDTKQSCRRH LPYIERDGTG TQLKDVSGDI DTVISQTERS GAVQSQNDQS  600
EIKGSYEVVE ATPPAVGLNV PSVQGTRDSR ETLQTSVCRE QGIHTELGLK QIQGKDVFDS  660
EPPYAEYAEY KETEYVPPSV TIDMNVLLRG LKRFLLNEEV SAVVLTGPGG SGKTTLAKFF  720
CEDGEVKNIF KNNVFFVHVS ENPNLSLMVQ TLYQQMGFQI PALQNESIAL HWLHQFLMET  780
ALHPSVLVLD DVWPGSESLL DKFDEFKTPN YKIMVTSRFE FPAFGFPYYL KPLNAEDEMT  840
LSHHSRAHNI ELLDDEDLIC VSPPPITFDD EDPITHFPDS SASYLGDGSS HVSTAIRPMD  900
QFHDSSASTL GDKSSYVPKD AGTMFEPDNP VKSKQTYMQQ KLELKVSASD KAMKKVMKAV  960
HAIKGVHSTS WDAENQRLTV MGQLDPALIA TRLRKIASKT EVISVGPAKE EIKEDKKDKL  1020
TERKDDKKAR NLTMKEKMED KNQEKKERSL TVKEKMEFDK RDEEERLLDE EERIIRPRSS  1080
ICPSGXGDAR QPCQEESRAC RETNQPNVKG LVLASSADLK SKLRESGNFD PHLQAKVLKV  1140
VDVSYGGEDG FNQAVKLSAE FLSNVKFIQE HNLLGRHLEE VNHGRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-24488562176squamosa promoter binding protein-like 4
3j5y_A7e-2311041183211290Eukaryotic peptide chain release factor subunit 1
3jag_ii7e-2311041183212291eRF1
3jah_ii7e-2311041183212291eRF1
3jai_ii7e-2311041183212291eRF1
6d90_jj1e-2211041183217296eRF1
6hcf_j11e-2211041183219298eRF1(AAQ)
6hcm_j11e-2211041183219298eRF1(AAQ)
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959575.10.0uncharacterized protein LOC103437407
TrEMBLA0A498JPL60.0A0A498JPL6_MALDO; Uncharacterized protein
STRINGXP_008356552.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1508325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.25e-26squamosa promoter binding protein-like 4